RNA id: TU663099


Basic Information

Item Value
RNA id TU663099
length 2053
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G581118
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18099236 ~ 18101432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAATTCACATCACAGTGCTGACTAATATCTACTAGTTATAGTAAGAGGTATGTAAGATTCACTTCTGCCTTCTTGTATGTAATGCTTACCCTCATACACCCAATCTGGGATGCCAtttaaaatgttgttgtgttttcCATTGGAGGTCACCTGTATGGCCTTAGCAGTAGGGCTGGTCTTCACATAGACATCATTTTCCCACACAAAGGCCTGCATGTGAGAGGAACAAAGATATGGAGATAAGTCTTAATGACTCGAGTTCCTCTTTAAACAAAGGTATAACACTGTAAAATGCACACTAGTGAGGAATATCTTTTGGTTTTCCAAGTAACCTGCAATATTATGTTTAGAGTAACAGTAACCTATTACATGTTGTCAATAAGTTATTTATTTGGCGCGTGATGAATATGCGATCTTTGAGCATTCCGGCTTTGAACTGAACACAAACAAAAGTACATGTTGAATTGTTGGGTGAGTCCTATTGATGAGGAGTGTTTGGAGGACGTGTTGAATTGTTGGCATATGGTGGCTGACCCATAAGAGTGTAATGGGTCAGCCACCAGAGAAGCATAGTATATCAACAAGTCCAATGGTTTCTCTCAAAGTGTCCTTGTAACCTACCATTTTGTTCCCTATTGGCGCCCATGCAAACAAATGGACTCGGTGAGGGATGTCTGGTGTACTGAGAAATGTCCTAAAATGAGATTAAATAAAAACTAACAGTATTAATGTCTTTGAGTTTGACAAAACACCATATACAGttcattcggaaaatattcagatcccttgactttttctacattttgttacgttacagctagaggtcgaccgattatgatttttcaacaccgataccgattattggaggaccaaaaaagccgatgccgattaatctgacaatttttatttatttgtaataatgacaattacaacaatactgaaataacacttattttaacttaatataatacatcaataaaatcaatttagcctcaaataaataatgaagcatgttcaatttggtttaaataaaagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaagaaagctaaagtttaagttccttgctcagaacatgagaacatatgaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattataggactatttccctctataccatttgtatttcattaatctTTGACTATTGGAAGTTCTTATAGGAACTTTAGTATTCCCAGTGTAacggtatagcttccgtccctctcctcgctcctccctgggctcgaaacagcaacacaacgacaacagccaccctcggagcagcgttacccatgcagagcaagggaaacaaccactgcaagtctcagagcgagtgacgtttgaaacgctattagcgcgctaactagccagccatttcacttcggttacaccagcctcatctcgggagttgataggcttgaagtcataaacagcgcaatgcttgacgcacaatgaagagctgctggcaaaatgcacaaaagtgctgtttgaatgaatgtttacgtacctgcttctgcctaccaccgctcagtcagatacttagatacttgtatgcttgtatgctcagtcagattatacacaacgcaggacacgctagataatatctagtaatatcatgaaccatgtgtagttaactagtgattatgattgattgattattttttataagatacgtttaatgctagatagcaacttaccttggcttactgcattcacgtaacaggcagtcagtctccttgtggagtgcaacaagaggcaggtcgttattgcgttggactagttaattgtaaggttgcaagattctGTCTTCTGCCCCTGAAGGAGCCAGCTAAATGAagctaggccttcattgaaaataagaatgtgttcttaactgacttgcctagttaaataaagattaaataaaggtgtacattttttttgtcaaagtcggtgtccaaaaatacagatttccgattgttatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU663068 lncRNA downstream 200 18047076 ~ 18099036 (-) True G581092
TU663091 lncRNA downstream 25031 18071210 ~ 18074205 (-) True G581111
TU663081 lncRNA downstream 35869 18060114 ~ 18063367 (-) True G581105
TU663066 lncRNA downstream 54549 18044480 ~ 18044687 (-) True G581091
TU663065 lncRNA downstream 54937 18043932 ~ 18044299 (-) True G581090
TU663113 lncRNA upstream 6162 18107594 ~ 18107869 (-) True G581124
TU663114 lncRNA upstream 6442 18107874 ~ 18108078 (-) True G581125
TU663123 lncRNA upstream 17204 18118636 ~ 18118925 (-) True G581134
TU663124 lncRNA upstream 18814 18120246 ~ 18121038 (-) True G581135
TU663125 lncRNA upstream 20415 18121847 ~ 18122497 (-) True G581136
XM_021608685.2 mRNA downstream 8965 18079991 ~ 18090271 (-) True LOC110527423
XM_036982849.1 mRNA downstream 8982 18079991 ~ 18090254 (-) False LOC110527423
XM_036982850.1 mRNA downstream 9026 18079991 ~ 18090210 (-) False LOC110527423
XR_002474132.2 mRNA downstream 159191 17934794 ~ 17940045 (-) True LOC110527421
XM_021608262.2 mRNA downstream 271887 17823526 ~ 17827349 (-) True LOC110527099
XM_036982853.1 mRNA upstream 22516 18123948 ~ 18159912 (-) False LOC110527425
XM_036982852.1 mRNA upstream 22516 18123948 ~ 18164000 (-) False LOC110527425
XM_036982851.1 mRNA upstream 22516 18123948 ~ 18164002 (-) True LOC110527425
XM_021608690.2 mRNA upstream 72122 18173554 ~ 18176952 (-) True LOC110527428
XM_021608691.2 mRNA upstream 77023 18178455 ~ 18193482 (-) True LOC110527429
TU663064 other downstream 55856 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 698700 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 1298550 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 1298614 16797680 ~ 16800622 (-) False LOC110527396
TU663175 other upstream 115726 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2114217 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 2671435 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 2737056 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 3320022 21421454 ~ 21424585 (-) True G585240

Expression Profile