RNA id: TU662963



Basic Information


Item Value
RNA id TU662963
length 466
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G580994
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18398972 ~ 18399995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCTTCTCTGGAGGAACATAGTGAGGACTGAGGCTGGTCTGAGCGGTGCTCTGGTGACTTCTGTACCTCTCATTGGCAGAGAAGGCTGCGTTGAAGGCAAAGTGCTTCACGTATGATTCCAAGATGTTCAATATGTTCATCTGGCACGGAAGCTTCACCAATTCCTCTTGTTGATGTAGTAGCAGTCATCCTCCAGTTTCTTCTTGAGAACCTCAGGGATGTCTATGTTGATGGTCTTGTCCTCACTCTCCATCTTAGCGTGAGCTTCCTGCTCTTCCTGCATTTTGTCCAAATCTTCGGAAGAGTCGCTCTCCTCACTTTTCAAAGATTCAGGATCCTCGGAATCGTCCTCGTCACTGTTGTCTGAAGACGTAATCAAACATGCGTCAtcactctcttccttctcttcagGAAGTGTCTTCAGAGCTGACTCAACACCGGGTAGACGACGACGTCTCTTCCCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU662949 lncRNA upstream 12607 18384709 ~ 18386365 (+) True G580988
TU662703 lncRNA upstream 99913 18296659 ~ 18299059 (+) False G580784
TU662966 lncRNA downstream 136 18400131 ~ 18401778 (+) False G580995
TU662965 lncRNA downstream 710 18400705 ~ 18401778 (+) True G580995
TU662991 lncRNA downstream 28261 18428256 ~ 18428581 (+) True G581018
TU663004 lncRNA downstream 58641 18458636 ~ 18458870 (+) True G581031
TU663010 lncRNA downstream 80288 18480283 ~ 18480548 (+) True G581037
XM_021608696.2 mRNA upstream 156809 18205301 ~ 18242163 (+) False LOC110527431
XM_021608694.2 mRNA upstream 156809 18217131 ~ 18242163 (+) True LOC110527431
XM_021608695.2 mRNA upstream 160028 18217128 ~ 18238944 (+) False LOC110527431
XM_021608692.2 mRNA upstream 194139 18202651 ~ 18204833 (+) True LOC110527430
XM_036982855.1 mRNA upstream 274657 18111715 ~ 18124315 (+) False LOC110528803
XM_036982862.1 mRNA downstream 4759 18404754 ~ 18495689 (+) False LOC110527437
XM_036982861.1 mRNA downstream 4760 18404755 ~ 18495689 (+) False LOC110527437
XM_036982863.1 mRNA downstream 37075 18437070 ~ 18495689 (+) False LOC110527437
XM_021608707.2 mRNA downstream 123608 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA downstream 139264 18539259 ~ 18581511 (+) True LOC110527438
TU662252 other upstream 582124 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 718304 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 998439 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 1064843 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1301432 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 92232 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 576683 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1617860 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 1838916 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2680833 21080828 ~ 21082615 (+) True G584643

Expression Profile