RNA id: TU664016



Basic Information


Item Value
RNA id TU664016
length 244
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G581981
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18979806 ~ 18980049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttttaaaagtatgcttagggtcattgtcctgctggaaggtgaacctccatcccagtctcaaatctctggaagactgaaacatgtttccctcaagaatttccctgtttGTAGCTCCAtccattccttaaattctgaccagtttcccagtccctgctgatgaaaaacatcggcagggactggatGTTCGCGTTTTCCTTGGCCAAAAAGCATCATTTTTGTCTCATCttaccttcttcttcttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU664000 lncRNA upstream 12793 18966808 ~ 18967013 (+) True G581965
TU663984 lncRNA upstream 22858 18956715 ~ 18956948 (+) True G581949
TU663814 lncRNA upstream 128660 18850698 ~ 18851146 (+) True G581783
TU663795 lncRNA upstream 142696 18836895 ~ 18837110 (+) True G581764
TU663781 lncRNA upstream 150309 18829270 ~ 18829497 (+) True G581751
TU664034 lncRNA downstream 12052 18992101 ~ 18992412 (+) True G581999
TU664045 lncRNA downstream 20918 19000967 ~ 19001168 (+) True G582010
TU664046 lncRNA downstream 21845 19001894 ~ 19002405 (+) True G582011
TU664056 lncRNA downstream 27846 19007895 ~ 19008122 (+) True G582021
TU664060 lncRNA downstream 30335 19010384 ~ 19010616 (+) True G582025
XM_021608707.2 mRNA upstream 398295 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA upstream 398295 18539259 ~ 18581511 (+) True LOC110527438
XM_036982862.1 mRNA upstream 484117 18404754 ~ 18495689 (+) False LOC110527437
XM_021608711.2 mRNA downstream 203334 19183383 ~ 19192955 (+) True LOC110527442
XM_021608712.2 mRNA downstream 445316 19425365 ~ 19430875 (+) True LOC110527443
XM_021608713.2 mRNA downstream 802796 19782845 ~ 19788004 (+) True LOC110527444
XM_021608721.2 mRNA downstream 902519 19882568 ~ 19915181 (+) False LOC110527447
XM_021608722.2 mRNA downstream 937396 19917445 ~ 19958310 (+) False LOC110527448
TU664011 other upstream 2807 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 486897 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 1162958 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 1299138 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 1579273 17398793 ~ 17400533 (+) True G580179
TU665478 other downstream 1037806 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 1258862 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2100779 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 2972980 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 3376534 22356583 ~ 22360227 (+) True c7h10orf53

Expression Profile