RNA id: TU664034



Basic Information


Item Value
RNA id TU664034
length 312
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G581999
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18992101 ~ 18992412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaaaAAATAACTgtattgtgccaaggatgcaagtcctatatacatCTACTGTAGTTATCACCACACATGACattcccacattgtagcctgtacttttaatatattcactgatcatgtactcttctttggcaaataaaggtgtggttcaggtatgaatctctgagACATTCTTTTTCAGTCACACCTGGTGTTGGATATATCAAACTCCgttctttgaatgatgctgtgtctgcatgtatgtattacaattatacacttcaacagtgtttaccattCATGCTCCTGGGACATGAATGATTACACATTgaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU664016 lncRNA upstream 12052 18979806 ~ 18980049 (+) True G581981
TU664000 lncRNA upstream 25088 18966808 ~ 18967013 (+) True G581965
TU663984 lncRNA upstream 35153 18956715 ~ 18956948 (+) True G581949
TU663814 lncRNA upstream 140955 18850698 ~ 18851146 (+) True G581783
TU663795 lncRNA upstream 154991 18836895 ~ 18837110 (+) True G581764
TU664045 lncRNA downstream 8555 19000967 ~ 19001168 (+) True G582010
TU664046 lncRNA downstream 9482 19001894 ~ 19002405 (+) True G582011
TU664056 lncRNA downstream 15483 19007895 ~ 19008122 (+) True G582021
TU664060 lncRNA downstream 17972 19010384 ~ 19010616 (+) True G582025
TU664063 lncRNA downstream 20642 19013054 ~ 19013283 (+) True G582028
XM_021608707.2 mRNA upstream 410590 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA upstream 410590 18539259 ~ 18581511 (+) True LOC110527438
XM_036982862.1 mRNA upstream 496412 18404754 ~ 18495689 (+) False LOC110527437
XM_021608711.2 mRNA downstream 190971 19183383 ~ 19192955 (+) True LOC110527442
XM_021608712.2 mRNA downstream 432953 19425365 ~ 19430875 (+) True LOC110527443
XM_021608713.2 mRNA downstream 790433 19782845 ~ 19788004 (+) True LOC110527444
XM_021608721.2 mRNA downstream 890156 19882568 ~ 19915181 (+) False LOC110527447
XM_021608722.2 mRNA downstream 925033 19917445 ~ 19958310 (+) False LOC110527448
TU664011 other upstream 15102 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 499192 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 1175253 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 1311433 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 1591568 17398793 ~ 17400533 (+) True G580179
TU665478 other downstream 1025443 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 1246499 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2088416 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 2960617 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 3364171 22356583 ~ 22360227 (+) True c7h10orf53

Expression Profile