RNA id: TU664960



Basic Information


Item Value
RNA id TU664960
length 206
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G582874
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19631273 ~ 19631478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cattcaaacagcactttcatgcatttgccagcagctgtttatgacttccaagattaggcttgtgtaaccgatgtgaaatggctagctagttagcggggtgcgcgctaatagcgtttcaaacgtcactcgctctgagacttggagtggttgttccccttgctctgcaagggccgtggcttttgtggagcgatgggtaacgctgcttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU664947 lncRNA upstream 7890 19623034 ~ 19623383 (+) True G582861
TU664922 lncRNA upstream 26408 19604578 ~ 19604865 (+) True G582836
TU664890 lncRNA upstream 46509 19584519 ~ 19584764 (+) True G582804
TU664886 lncRNA upstream 49293 19581770 ~ 19581980 (+) True G582800
TU664736 lncRNA upstream 160448 19470534 ~ 19470825 (+) True G582652
TU664973 lncRNA downstream 14929 19646407 ~ 19646685 (+) True G582887
TU665133 lncRNA downstream 130960 19762438 ~ 19762843 (+) True G583045
TU665137 lncRNA downstream 137998 19769476 ~ 19769731 (+) True G583049
TU665141 lncRNA downstream 141449 19772927 ~ 19773242 (+) True G583053
TU665146 lncRNA downstream 148505 19779983 ~ 19780230 (+) True G583058
XM_021608712.2 mRNA upstream 200398 19425365 ~ 19430875 (+) True LOC110527443
XM_021608711.2 mRNA upstream 438318 19183383 ~ 19192955 (+) True LOC110527442
XM_021608707.2 mRNA upstream 1049762 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA upstream 1049762 18539259 ~ 18581511 (+) True LOC110527438
XM_036982863.1 mRNA upstream 1135584 18437070 ~ 18495689 (+) False LOC110527437
XM_021608713.2 mRNA downstream 151367 19782845 ~ 19788004 (+) True LOC110527444
XM_021608721.2 mRNA downstream 251090 19882568 ~ 19915181 (+) False LOC110527447
XM_021608722.2 mRNA downstream 285967 19917445 ~ 19958310 (+) False LOC110527448
XM_021608723.2 mRNA downstream 285968 19917446 ~ 19958310 (+) True LOC110527448
XM_036982865.1 mRNA downstream 388004 20019482 ~ 20028775 (+) False LOC110528807
TU664011 other upstream 654274 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 1138364 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 1814425 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 1950605 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 2230740 17398793 ~ 17400533 (+) True G580179
TU665478 other downstream 386377 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 607433 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 1449350 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 2321551 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 2725105 22356583 ~ 22360227 (+) True c7h10orf53

Expression Profile