RNA id: TU665287


Basic Information

Item Value
RNA id TU665287
length 2462
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G583190
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19812037 ~ 19814498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactttgaagaatatctatttttatttgtttaacacttaacacttttttggttactacatgattacatatgggctcctgagtggcacatcggtttaaggcactgcatctgtacaggaggcgtcactacagtccctggttcaaatccaggctgtgtcacatccggCCTTGATTAGGAGTTCCATAGGGTatgcgcacaattggctcagcatcgtctgggtttggccggagtaggccgtcattgtaaataagaatttgtttttaacgtacttacctagttaaataaaggttacatgtaaaaaaaaaaaaaatttaaaaaaattaaaaaagacatgttatttcatagtttggatgtcttcaattattaaaaataatgaaaagccctggaatgagtaagtgtccacacttttgactggtactgtatatccgtGCATACACAATATCTAGGTCAAATACGGGAGAGGCGATGTGCGGTGAACTTTTGCCAGGTGCTGTATATAAATGTATTCAGTTTTGTTCTTTAGCTGTTCTTGTCTGTTAATGTTCTGCATTAGTTCATGTTTTTTGTGGACCCCTGCTATGGCAACAGCTACTGGGGATCCTAATTAAATACCAAATACCCCATAAGTTATATATTTGACAGAAATCATCTGAATCTGTATCATTTCAATCCATCATGAATTCTGAAAAGTATTCTCACCAGGCTCCAAAAGGCCTTCTCGCATCCTGCACCACTAGCACTCCATTATCTAATACTGACCCCTCTTTACCCCATCCTCCCTTATCCTCCACTCGTCCATCCCCGCCCCATCCCTCCATTTCTCCTCATCTACTGTGTCTCATCATGAGGGCCTGTGAACAGCAGGGTAGATGTCAGAGCTCTGCTGACACTTAAACAGCCCAGTCGGAGATCTGGCATTATGGCTGCATCTGGCAGCAAAGCTGCAGGATTGCATCAGgaaatcacacacgcacacacatatgcatacacacatattcaacccctttgctatggcaaGCCTACATAAGTTCAGGAAAAATGTGCTTAagtcacaagttgcatggactcacgttgtgtgcaataatagtcattcaaaaataatgctaaacactatctcatctctgtaacccacacatacaatgatctgtaaggtccctcagttttgagcagtgaatttcaaacacagattcaaccacaaagaccagggaggttttccaatgcctcgtaaagaagtgcacctattggtagatgggagagaaaaaaaacttacgttgaatatccctttgaccatgctgaagttattaattacactttggatggtgtatcgacacactcagtcactacaaagatacaggtgtccttcctaactcagaggAAGCGCtcaggatttcaccatgaggccaatggtgactttaaaacagttacagagttgaatggctgtgataggagaaaactgagcatggatcaacaacattatagttactccacaatgctaaaCTAAATGACAGCGTGAAAAGAAGGAATCCTGTACAGAATGAAAatactccaaaacatgcatcctgtttgtaacaaggcactaaagtaatactgaaacaaatgttgcaaagcaattcactttttgacctgaatacaaagtgttatgtttggggcaaatccaatacaacattttactgagtaccactctccatttTTTCAAGGataatggtggctgcatcatgttatgggtatgcttgtaatcgttaaggactggggagcttttcaggataaaaaaagaaatggaatggagctaagcacaggcaaaattctacAGGAAAATgtggttcagtctactttcctCCAGACACTgcgagatgaattcacctttcagcaggacattaacctaaaacacatctacactggagttgtttaccaagaagacagtttggacttaaatctacttgaaaatctatggcaacacctgaaaatggttgtctagcaatgatcagcaaccaatttgacagagcttgaataattttgaaaagaaatgtgaaaatattgtacaatccagctgTGGAAAGCTCCTAGAGATTTATCcagaaagaatcacagctgtaatcgctgacaaaggtgattctaacatgtattgactcaggggtgtgaatatgtATGTGAATTCGAtttttatgtatttcattttcaataattttgcaaaaatgttttcactttatcattatggggtaatgtgtgtgaataagggtgagaaaaaaaaagttttttcaatttttaattctggctgtaacacaacaaaatgtggaataagtcaagggaataaatactttctgaatgcaataTTTATCCAACCCAGTGTGAAAGAGACCCATTTAACCTTTTACGTGTTTATGCAAATGAAAACAGAACAACACTGGTGTGGGGCCATGTTGTCAGGCTCACAATAGACCAAGGTGGCAGGGACAATAAACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665303 lncRNA downstream 21220 19790579 ~ 19790817 (-) True G583206
TU665296 lncRNA downstream 38000 19773815 ~ 19774037 (-) True G583199
TU665289 lncRNA downstream 46711 19765109 ~ 19765326 (-) True G583192
TU664958 lncRNA downstream 181332 19630488 ~ 19630705 (-) True G582872
TU664949 lncRNA downstream 189081 19622557 ~ 19622956 (-) True G582863
TU665285 lncRNA upstream 5212 19819710 ~ 19823496 (-) True G583188
TU665321 lncRNA upstream 28936 19843434 ~ 19843829 (-) True G583223
TU665283 lncRNA upstream 33222 19847720 ~ 19851609 (-) True G583186
TU665347 lncRNA upstream 62682 19877180 ~ 19909687 (-) True G583246
TU665358 lncRNA upstream 74891 19889389 ~ 19892589 (-) True G583255
XR_002474133.2 mRNA downstream 630947 19176035 ~ 19181090 (-) True LOC110527441
XR_002474071.2 mRNA downstream 657438 19145757 ~ 19154599 (-) True LOC110527100
XR_005052702.1 mRNA downstream 666463 19142146 ~ 19145574 (-) True LOC118965376
XM_021608709.2 mRNA downstream 743199 19062829 ~ 19068838 (-) True LOC110527440
XM_021608710.2 mRNA downstream 744571 19062829 ~ 19067466 (-) False LOC110527440
XM_021608715.2 mRNA upstream 9133 19823631 ~ 19832571 (-) False LOC110527445
XM_021608716.2 mRNA upstream 9133 19823631 ~ 19832571 (-) True LOC110527445
XM_036982864.1 mRNA upstream 37306 19851804 ~ 19881463 (-) False LOC110527446
XM_021608719.2 mRNA upstream 37307 19851805 ~ 19881452 (-) False LOC110527446
XM_021608717.2 mRNA upstream 37307 19851805 ~ 19881758 (-) False LOC110527446
TU663175 other downstream 1576999 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 1768657 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 2411501 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 3011351 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 3011415 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 401151 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 958369 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 1023990 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 1606956 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 1702897 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile