RNA id: TU665139


Basic Information

Item Value
RNA id TU665139
length 2295
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G583051
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19849292 ~ 19851586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAGGAATACTGGTAATCATTTGTTTATCTTCACCTGACATATAAAACATAAACTATTGGGCTTTGTCTAGATTcaatcattcaacagaaatgcaTTAGGAACAAGAAATGTTGTCTTTGAAGTCTGTCCATTGTTCATCCTGTTGCTATAGCTTATAACAGAAGTGTTACAGAAAACATGGATTTGAATGGATGCAAAACCCGATATTACTGTCATACAATTGATATTATTTCATTAATAGAGCAACATTATAACCTAAAGAAATAAGGGAGAGAAACATAAACACAGATATCTATACCTAAATATACATTTatggcagaacagaacatgttgACATTCCATAATGGGCCAGACAACATTAGAAGCCAGCAAAGATGAGTGCACTTAATGCATGAAACAGTGTCAGATTGAAGGTGCCAATGTGACTGACTGGGATTCAAACCCAGGTCTCCTGCATGCCACAAGACCTGAAGGGCTAACTCAAGTCTTTACGTCTCGGGAAAGATTACTCATCTTACACCAAGAACAAGATATTTGATTCATCTTGCACCAAGAACAATATAAATGACTCATCTTACACCAAGACCAAGAGATATTAGTCATCTTACACCAAGACCCAGCAAACACGGCCTCATCTACACAGTAGAGAAGGGAAACCCTGGGGTCTGGAACTGTTATAGGCCAGCGTGTGCAACCACACACATTACCATTATATCACTCAAACCCAAAACACACAACAAGCTTAATGATCAAGTAGCAAAGCATATTTACATACCAGAGATACATGTCACTACTATAAGCAATTGGCTGCAAGTTGGTAATGGTAAAATACATGGGCACGCGATTTATTCTTTATGCGTATATAAATGTGTTATATATTTGAAGACTGTCGTTGTGAATCCCAGCCATTGACCCCAGGATATGATTGGTTGCTCTGTAACCAACCAGTGAATGGCAGTTTATCACAATCTCTTGGAACTGTACTTGTAACCTGCGCTACAGGTTTAAGATGGTAGGGTTAAGTTTTTGTTTTTAATCGACATTACTCATGCAATTTAACATGCATAGAGAAACAAGAGACAGTGCCATCTAGGCATCGTCTCTCGCCTAGAGCAGCATGAGATGAACAACGGCAATGTTTCACCAAATGTTAGCTACTTCCATGCCGTTGATTACATTTCCTAATGGGATGCGTTAGATGTTTGGTTACAATCTAATGACCATGGCTCGTTGTCCTTGCCCTGTAGAACAGAATTCATGCATCAGTTGTAAAACTGAGAGACTGACACATCGTATGTGCTTCTATGATAGCTGTGCAGAATAGATGATAGAAATAGATGATGTACTGTGTATATCAGTGGTTCGCAATGCCCTTGATTTACAATGTGTTTCGTTGTATTATTTATATTGTCGGTGCATTTGACAGATAGTCTCATGGCATTCATAGCTACTAAACCTGAAGaaaggaataaaaaaaaaataggatcAACCCCACATGTTCATTCAATAGATTTTCAAGCATTTAAAGAGGACAGAAATGTCATCGGTATTTCACATTGTCTTATAAAAACCGACAACTAATTAGACAACCCCAAATTAAAAAAAATGCACACTTACATCAAATCTGTTATATACATTATATCTACAGTTGGAGGTCATTTCAGCAGTAAATATCTGTCAAATGCTAAAAACCAAACAAACCCTCAACCCTGCCACTTCCATGGAATGCTGTGAACCAAGGGAATCTATTTTCTACAATGCTAGCGCGCAAGAGAGAGAGTTAACATACTGTAGCTTTAGTCAACGTTACACCTTACAAAAATATCTGAACATTTCACAAAGAcatgtgatacagtatatagcactAGGCCGTTGGCAGGAGAGTTCGACAGCTATCAAAGATGGAGCTGATTTAAAGGAATGCCGTCAATTTACTGAGTGAAACCCTGTCATGCATTCACAATATCAGGTAGAAAAGATGTGAACCGTGACAGATTCATTGAGTGCAGTGGTGGGTATGTTTAGATTACCAATCAATATTCCAATTTCAAGACTGTTTGACAGGATTTTGAAAACGTAATGGTTGCCAATTAGCAAAATGCAGAACCTGAGATATTAAACCCTCAACAGTAGACATTAATTTGCACCTATGCAATAATAGCAAcaccactactaataataatacactgtacatagacatacaTTAACAGGACCACTTCACTGTAAAATTTGCAAATACTGTATGTGCACTTGAAAATTATATTATCTGACcaagacaaaaaatatatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665168 lncRNA upstream 38541 19810427 ~ 19810751 (+) True G583079
TU665167 lncRNA upstream 39574 19809357 ~ 19809718 (+) True G583078
TU665161 lncRNA upstream 46029 19802977 ~ 19803263 (+) True G583072
TU665157 lncRNA upstream 49455 19799615 ~ 19799837 (+) True G583068
TU665153 lncRNA upstream 59089 19789957 ~ 19790203 (+) True G583064
TU665194 lncRNA downstream 62777 19914363 ~ 19914835 (+) True LOC110527447
TU665492 lncRNA downstream 174251 20025837 ~ 20026115 (+) True G583379
TU665493 lncRNA downstream 174779 20026365 ~ 20026866 (+) True G583380
TU665494 lncRNA downstream 175301 20026887 ~ 20027228 (+) True G583381
TU665490 lncRNA downstream 175740 20027326 ~ 20028201 (+) True LOC110528807
XM_021608713.2 mRNA upstream 61288 19782845 ~ 19788004 (+) True LOC110527444
XM_021608712.2 mRNA upstream 418417 19425365 ~ 19430875 (+) True LOC110527443
XM_021608711.2 mRNA upstream 656337 19183383 ~ 19192955 (+) True LOC110527442
XM_021608707.2 mRNA upstream 1267781 18523603 ~ 18581511 (+) False LOC110527438
XM_021608721.2 mRNA downstream 30982 19882568 ~ 19915181 (+) False LOC110527447
XM_021608722.2 mRNA downstream 65859 19917445 ~ 19958310 (+) False LOC110527448
XM_021608723.2 mRNA downstream 65860 19917446 ~ 19958310 (+) True LOC110527448
XM_036982865.1 mRNA downstream 167896 20019482 ~ 20028775 (+) False LOC110528807
XM_021608728.2 mRNA downstream 211390 20062976 ~ 20064980 (+) True LOC110527452
TU664011 other upstream 872293 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 1356383 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2032444 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 2168624 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 2448759 17398793 ~ 17400533 (+) True G580179
TU665478 other downstream 166269 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 387325 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 1229242 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 2101443 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 2504997 22356583 ~ 22360227 (+) True c7h10orf53

Expression Profile