RNA id: TU666117



Basic Information


Item Value
RNA id TU666117
length 236
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G583970
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20692292 ~ 20692527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAATAGGCTACTGGCTGCATTCTCTTCAGTCCTGTCGTAACCAATCCATGTTGATTACTGTACGAGTGTCTTGGAGCAGCCTTgtggaaacacaaacaaacacacacacacacacacacacacacgttatgttcTTCTATTGTTGTGGGGACCTGTGGGGACCtttatttccattcaaaatattattttccctaacacctaaccctaaatctaaccctaacatttacccttacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU666113 lncRNA upstream 6854 20685180 ~ 20685438 (+) True G583966
TU666111 lncRNA upstream 9885 20682199 ~ 20682407 (+) True G583964
TU666012 lncRNA upstream 113897 20549161 ~ 20578395 (+) True G583871
TU666020 lncRNA upstream 132632 20559261 ~ 20559660 (+) True G583878
TU665967 lncRNA upstream 225652 20466405 ~ 20466640 (+) True G583831
TU666130 lncRNA downstream 21186 20713713 ~ 20713978 (+) True G583983
TU666429 lncRNA downstream 28086 20720613 ~ 20720966 (+) True G584253
TU666438 lncRNA downstream 34462 20726989 ~ 20727429 (+) True G584262
TU666459 lncRNA downstream 69660 20762187 ~ 20765068 (+) True G584282
TU666465 lncRNA downstream 74805 20767332 ~ 20767823 (+) True G584288
XM_021608739.2 mRNA upstream 33948 20634135 ~ 20658344 (+) True LOC110527464
XM_036982879.1 mRNA upstream 36998 20634135 ~ 20655294 (+) False LOC110527464
XM_036982877.1 mRNA upstream 152629 20527428 ~ 20539663 (+) False LOC110527460
XM_021608754.2 mRNA downstream 168277 20860804 ~ 20868580 (+) True LOC110527471
XM_021608756.2 mRNA downstream 176936 20869463 ~ 20873915 (+) False LOC110527474
XM_021608757.2 mRNA downstream 176936 20869463 ~ 20873915 (+) True LOC110527474
XM_036982890.1 mRNA downstream 181725 20874252 ~ 20893679 (+) False LOC110528809
XM_036982891.1 mRNA downstream 181730 20874257 ~ 20893679 (+) False LOC110528809
TU665732 other upstream 452495 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 670565 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 1715293 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2199383 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2875444 17813342 ~ 17816848 (+) True G580365
TU666895 other downstream 388301 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1260502 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1664056 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1993962 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 2008667 22701194 ~ 22703821 (+) True LOC110527523

Expression Profile