RNA id: TU666484


Basic Information

Item Value
RNA id TU666484
length 232
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G584306
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20791722 ~ 20791953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGATGTTTTTCACCAGCGAGGCCTTCTTTAAGCTGTTTTTCCTCTCCACATAGTTAGAGGGGACGTAGCCGGTCCGGTTGGAGGTGTTCCTCACCTTCCACCACGTCTTGCTGTCATCCAGGAGCCACAGCCGCTCGTTTTTCCGGATGTCAAGTTCTTGTTCCTGCTGAGCCGAGTAGTCCCACTTGGCTATAACTATCACCTCCTCCGTCATTTTTCATGGAGTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666470 lncRNA upstream 17210 20773117 ~ 20774512 (+) True G584293
TU666466 lncRNA upstream 23419 20768022 ~ 20768303 (+) True G584289
TU666465 lncRNA upstream 23899 20767332 ~ 20767823 (+) True G584288
TU666459 lncRNA upstream 26654 20762187 ~ 20765068 (+) True G584282
TU666438 lncRNA upstream 64293 20726989 ~ 20727429 (+) True G584262
TU666492 lncRNA downstream 11264 20803217 ~ 20803476 (+) True G584313
TU666499 lncRNA downstream 22973 20814926 ~ 20815142 (+) True G584320
TU666502 lncRNA downstream 29846 20821799 ~ 20854705 (+) True G584323
TU666516 lncRNA downstream 44482 20836435 ~ 20837578 (+) False G584335
TU666518 lncRNA downstream 44797 20836750 ~ 20837578 (+) True G584335
XM_021608739.2 mRNA upstream 133378 20634135 ~ 20658344 (+) True LOC110527464
XM_036982879.1 mRNA upstream 136428 20634135 ~ 20655294 (+) False LOC110527464
XM_036982877.1 mRNA upstream 252059 20527428 ~ 20539663 (+) False LOC110527460
XM_021608754.2 mRNA downstream 68851 20860804 ~ 20868580 (+) True LOC110527471
XM_021608756.2 mRNA downstream 77510 20869463 ~ 20873915 (+) False LOC110527474
XM_021608757.2 mRNA downstream 77510 20869463 ~ 20873915 (+) True LOC110527474
XM_036982890.1 mRNA downstream 82299 20874252 ~ 20893679 (+) False LOC110528809
XM_036982891.1 mRNA downstream 82304 20874257 ~ 20893679 (+) False LOC110528809
TU665732 other upstream 551925 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 769995 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 1814723 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2298813 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2974874 17813342 ~ 17816848 (+) True G580365
TU666895 other downstream 288875 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1161076 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1564630 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1894536 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1909241 22701194 ~ 22703821 (+) True LOC110527523

Expression Profile