RNA id: TU666783


Basic Information

Item Value
RNA id TU666783
length 1127
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G584555
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20892522 ~ 20893678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATTCCACAGCTGATTTATTTCACCAAGCCTCATTTTCACAACTTCTGAATCTTTTTTTAGTGTTATGATGCgctcttaaaaaaaaatattcatacaCTTCCATATGGCACAGCATCGCCAGTGTTGGACAACATTAGAACGTCAGAGCGTTTTGGGGGAAATTCACAcacttaaataaataaatcataaaaaATTAACTAGACACCATATCATACATACAAAGTCTACACATTGAATACAGTAACGTTCTGTAACAACACAttgtaaaatgttttatttctctgTACAAATACTATTTGACATTTCACAGATATGACTTCATGATATATATTTGGCCAACAGAAATTATTTGTTTGACTCAAAATCTAAATTCACATTATTTTCCATTTGGCTGTAGTCGATTCACCAAGCTAGTTTTGAGATCTTTGCTGCCTTTATTATATCCATAACTGTCTTAGTTTATCAATTACAGCTAACATATATTGAACATCATGTTCATTTATATTTTgagtaaactatccctttaatgtttATTTTTACGCAACACTTCTTCAGCACTCTCTCCATTCTCCACATTTCCAACCAAGCGGATGCCTGGCTCGTATCCAACAAACCTTTCTTACTTCTTTGGCTGACATTACACCACTCCAGAAAACAACAGGCTCTTTCCCACTGGAgccacacacacaagaacacatacagacacacacacacaagaacacacacatacagacacactcaTGTTCTTTTTGTCTCTCACATTTCTctttctatctcacacacacactcaaacacaaacacagatagATGTAGCTTAAGCTGATGAGTCAGTCCATGGTTTCTACATGGTTTCTCCACCCTTACACCCAGGAGTCAGGGGATCCAGTGTACTGGTTAGCCTTCTGAGAAGGCCTCCTCGTGGTGGAGTAGAAGTCCACGTAGTTAGCGGTGTTGGTATTGGATTTCAGTCTGTTAGGTTGGGAGGTGTTGTATCGCTCTGTGGAGGTCAGGTTCTCTGGCTCGTCCTGGTAAGGCCCAGGCTCCTCCTCCCCGTAGCCGTGCGGCGATGACAGATACATTCTGTAGTTGTTGTAAGTGTTCCTATCCAGCTCGTCGGAGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666763 lncRNA downstream 17952 20874310 ~ 20874570 (-) True G584542
TU666710 lncRNA downstream 18611 20871868 ~ 20873911 (-) True G584501
TU666670 lncRNA downstream 53186 20838488 ~ 20839336 (-) True LOC110527470
TU666709 lncRNA downstream 86580 20805733 ~ 20805942 (-) True G584500
TU666699 lncRNA downstream 99417 20792872 ~ 20793105 (-) True G584490
TU666730 lncRNA upstream 49245 20942923 ~ 20943944 (-) False LOC110527476
TU666731 lncRNA upstream 49761 20943439 ~ 20945214 (-) False LOC110527476
TU666732 lncRNA upstream 49761 20943439 ~ 20943944 (-) False LOC110527476
TU666733 lncRNA upstream 52745 20946423 ~ 20949096 (-) False LOC110527476
TU666734 lncRNA upstream 52745 20946423 ~ 20949096 (-) False LOC110527476
XM_021608752.2 mRNA downstream 53123 20838415 ~ 20839399 (-) False LOC110527470
XM_021608749.2 mRNA downstream 55167 20780524 ~ 20837355 (-) True LOC110527469
XM_021608747.2 mRNA downstream 55169 20780524 ~ 20837353 (-) False LOC110527469
XM_021608750.2 mRNA downstream 66740 20780524 ~ 20825782 (-) False LOC110527469
XM_021608751.2 mRNA downstream 105332 20780524 ~ 20787190 (-) False LOC110527469
trnat-ugu-34 mRNA upstream 37430 20931108 ~ 20931180 (-) True trnat-ugu-34
LOC110527476 mRNA upstream 49259 20942937 ~ 20947259 (-) False LOC110527476
XM_036982898.1 mRNA upstream 58299 20951977 ~ 21021194 (-) False LOC110527478
XM_036982900.1 mRNA upstream 58299 20951977 ~ 21021194 (-) False LOC110527478
XM_036982903.1 mRNA upstream 58299 20951977 ~ 21021194 (-) False LOC110527478
TU666669 other downstream 53186 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 114457 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 642537 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2657484 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2849142 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 527776 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 623717 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1199134 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1569530 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1716483 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile