RNA id: TU666895


Basic Information

Item Value
RNA id TU666895
length 1788
RNA type TUCP
GC content 0.41
exon number 1
gene id G584643
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21080828 ~ 21082615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCACAGAGCATTTGTTATGAACATTATCAACAAAAAAGAACAAGAGACAGTAAACATGTTCAAGCATCCGTGATATCCTCTTGCATGTATTTCTTTCCACACAACAGAAAACCCATACGTCAACATATTTCGTATCTAATAACTCTGTGTACCcaatatacaaaaacaacaacaggtaacACAGCAAAGGCTGTACCGCATAACAAACAACCCACACATGAGTCTACTTAGAATACGGGATTATTTCTCAAAGAGCTACCATTTACATAACAGTACTTTGCTACATCGTTTTTGTTTCATCTTTTGTTCATTGGTTTCATTCTGTACTCCTACATTTTGACAGACGTGTGGACCAAATGAACAAAATGGAAGTGAATGTCAAAAATATTGTTCTCGTAATgataaataataaaacataaataaatgcctgcattttctctttattttttcttCACTTCCTCTTATGATGATCATGCATGTACTTATAAACTACTTTAAAAAATACTGTGAGGGCgtgagtgtgtgttctgtgtgtaggaAAATACGCAATAAACAACGACAACAAAAATTAAAAACTAAAACATAATCTTTCCTGTGTTGCATTGATGGAGTTTGGTGCAATAAAGTGGTAACAAAGAAACCCTGTACTTTAATGACAAGTTAGGTTTCAAAAAAATAACTTGGAATTGATTTGGGGTCTTATTTCTGTTCATGAATAAAATACATAGAAGATGACTACAGAATGTATTGCAAAAAGCATGACTTTGTCTTTGCTGTAAAGAACAACTGAATCACGGCCATTGTTATCTTAAACAAAGAAGAAAATTGTTTTGGTCCTGTACAAGGCATTACAGAAAACTAAGTCTTCACTGTGGGAAAGACTTGTACTCACATATATAGTGGGTACCAGCATTAGTGGGAGCAGTTGGCATTGTACCATAATAACAAAACAACCTTGCAGTGCAAAGAATATCGATCTATTTTCAAATGCCTACATTAGAATGCCAAAGTACTTGGGATAACAGCTCTAGTCCTCTTTAAGACGAAACTTACATCACACGAAGATGCACTCCCTCACTCTCAGCCACACGATTGGTCCCTGATTCATCAACTACTTGTAtaaagcacaggaggttggtggcaccttaactggggagaacgggctcgtggtaatgactgtagttgaatggtatcaaaaacatcaaacacatggtttccacgtgcctgatgccattccatttgctctgttccagctattattatgagccgtcctcccctcagcagcctcctgtggattCAAGTGGATAAAGCTAATTGGGCTCTGACATCCTGCTCTAAGTTCCCTTGCTGTGGTCCATGTCAGACCCACACAGAGGCATACCATTCTTCACAGTCATACAGAGTTCGGCCCATTCCCATGCTTTACCCAACTTTAGAGAACACCACCATTTTGCTGTCTCCAATAAGTCCTATAGCGCATCTGGAAaaggcaccgtattccctacatagtgcactacttttgaccaaagcagTGCACCTAATAGGGGAAagagtgccattttggacacacacCCTATTCTCCAGAGTGAGCTTCCAGATCTGCGATGAGAACGTTTCCATCGAAGTCTGTGGCCTGGGAACTAGTATGTCTGTAGTACGCGTTTCCCAGGGACGGCAGTCTGTGGAAGTGCGTCCTGTTCCTCTTGTAGACGAGCCAGAGCACCGCCACCAGCACGGCGAAGATCAGCATGGCCACCAGGACCGCGGCTGGGACGAAACTGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666863 lncRNA upstream 47238 21033342 ~ 21033590 (+) True G584617
TU666862 lncRNA upstream 49144 21031459 ~ 21031684 (+) True G584616
TU666502 lncRNA upstream 226123 20821799 ~ 20854705 (+) True G584323
TU666516 lncRNA upstream 243250 20836435 ~ 20837578 (+) False G584335
TU666518 lncRNA upstream 243250 20836750 ~ 20837578 (+) True G584335
TU666896 lncRNA downstream 897 21083512 ~ 21083810 (+) True G584644
TU666897 lncRNA downstream 1846 21084461 ~ 21085015 (+) True G584645
TU666923 lncRNA downstream 45289 21127904 ~ 21128197 (+) True G584671
TU666966 lncRNA downstream 48295 21130910 ~ 21131228 (+) True G584711
TU666969 lncRNA downstream 50044 21132659 ~ 21137506 (+) True G584714
XM_021608763.2 mRNA upstream 35896 21033870 ~ 21044932 (+) True LOC110527479
XM_036982884.1 mRNA upstream 139103 20893808 ~ 20941725 (+) False LOC110527473
XM_036982881.1 mRNA upstream 139103 20893809 ~ 20941725 (+) False LOC110527473
XM_036982885.1 mRNA upstream 139103 20893809 ~ 20941725 (+) False LOC110527473
XM_036982886.1 mRNA upstream 139103 20893809 ~ 20941725 (+) False LOC110527473
XM_036982929.1 mRNA downstream 94368 21176983 ~ 21183344 (+) True LOC110527484
XM_036981861.1 mRNA downstream 163743 21246358 ~ 21249349 (+) False sumo1
NM_001160594.1 mRNA downstream 163768 21246383 ~ 21249339 (+) True sumo1
XM_036982935.1 mRNA downstream 232391 21315006 ~ 21337432 (+) False LOC110527488
XM_036982936.1 mRNA downstream 233211 21315826 ~ 21333442 (+) False LOC110527488
TU665732 other upstream 841031 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1059101 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2103829 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2587919 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 3263980 17813342 ~ 17816848 (+) True G580365
TU667948 other downstream 870414 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1273968 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1603874 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1618579 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1927446 23010061 ~ 23015120 (+) True G586685

Expression Profile