RNA id: TU666969


Basic Information

Item Value
RNA id TU666969
length 4734
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G584714
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21132659 ~ 21137506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATTCATGGTGGGTTTTTattcaaatgtttttataaaggAAAGCACAAGGATAAGATTGTTCTACCAATCTAGTGAAACAATGGCTGTAACATACATAaggaaacaaaaatacaaaatgatTTTATTTTTCTAACTGATGATACCCAGCAGCATCATCACCCAGAcatgtaaaacaaacaaaaaaaaaatctatcttTCTGCATAAATTACTactatttcattttatttattgtCATCAGCCAGTCTATATCACACAAGTGTTGGTTGAATTTGCTGTACAACTAGCCTATTGATCCAGACACAGAATTGCACTTGGTTCAGACATCGCTAGCTATGCAAGACTACAAATAGTATGGTTGCAATTTAAACTTCCATCTTTCAGACttctacaacccccccccccccccccccccccccctcaccacatgAACTGCCAACACAAAGTCCCATactgagaaggtgtgtgtgtgtgtttcaagggAAGAATAGATCAAGACTAGCCGCCTACACTACCACCTGGTGGGTTTGCGTGTTCCtcttttataaaataaaaaacccCCGCCTCATTCCCCAGCCTATTGGAACCTCTGATCGACAAGCAGCacgttgtttgtttttttttaactttgGAGACTCCAAAACTAAGGCGGAGCTAAAAACCGCATTCCACCAGTAGCAATGTTCATATCggaaaaacacaacaaaaaacaAGATTCAGCATGATACTATACTAAACAAAACAGAATGTTTCTTTACTTGAGGACAGAGTAGTAGGAGGAAGAATAGTAAAAATTGCTATTGGCCAGCTCCTGAGCTTGGCTTTGGATGCGTCCCAAATCGGACCTTATTTTCTTTATGGTGCAATGCTTttgacccatagagatacatagaGGACTCGAGTGCCCAAAAGCCCATTTTAGCATTggcagcaccattgaggactttcaccattttgaagtagtcaactgggtgggacttccaatgggttaaagggatacttcgggattttggcaatgaggccctttatctacttctccAGAGTCAAATGaatttgtggataccatttttatgtctctgtgtccagtatcaatgaagttagaggtagttttgcaagccaatgctgactagtgttagcgcaatgactggaagtctatgggtatctgctagcatgctagtagataaagggcatcattgccaaaatcccgaagtatccctttaacccattggaagtcccacccagttgactacttcaaaatgctCTCACAGACGCCATAATGGGATAGACACAATGATGTGATGTCTATCTaactatgtttttatttatttaacctttattaatctaggcaagtcagttaagaacaaattattatttacaatgacggcctacagtggattaacagccttgttcaggagcagaacgacagatttttaccttgtcagctcggggattcgatccagcaaccttacggttactagtccaatgtttTGAACGTGAAAAGCCTAtgggtcaaaagtaatgcactacataagAAAAAGGGTGCGATTTGGTCCGCAGCTTTTGTGTTCTTCTCTGGTGAGGCGGGCTGGACCTGCAAACCCAGCCGTACCAGCCCAGACAGAACTCTGAGGTAGATAAAAACCAGTCACACATGACCACACATGGTGACCATTCAAGATGACCATTCAAATGTTCTTTAAAGACAACCCCGTCAATTTAGCGTAAAGTAAAACAGATTGTAATTTCACCATTAAAGTTAAGCATTTTCTATTAATATTACTGTATCTGTTGAAGTAAAAAATAGCAGAGAAAAAAGTTTAACCGCCTTGACGTTACCTCACAATTTCAAGCTTGCATTTCTTTTAAATCTATacgtgttttttttatttgaattgtAGGCTCTCTCGCCTTAATTAGGGAGATGAGATCAGTAGGTGTAGCATTTGATGGAGGTTCACATCCTCGGCTGTGTGTGAAGTATGACAAAACAGGACACCTACCCTGTCAAAGTCTAAAGAGACCTTACTATGGACTGACAGGAGTTCTAATTAAGAGTGGCTGTTCTTTTTAATGTATCCTGGTTAGACCAGGCTGAATACTGTGATCACCATGAAGTGAAACAGTGAAACGTCAGGGAATCAGTTCGGATTCTGCCAGGCTATGTAAAATGACTTATGATGTTAGAGGAAGGCACATTATCCAACCCATCATCTATTTGGCAAAACATCTGCTTCTTTATCAGTTCTCTATTCATAGATTGATTGACAGCTGCCAAACGGCCAATCCTACATATTTAATCTGATACAGAAAATCATGTCAGACATTAACCCTAAAAGCCTAATTGAATGATAATATCTTATAAAGACCAAAAATAAAAACCAGTAACACCTCACCAAATGAACACTTTTTGCAAGCAACATGTTTTTCATCATATATCTTGGCTAATaaactacctataaaacccattGGAAATCTCTTTTTCCTTAAGTCAACAGATTCCACAAAAAAAAAGAATCAATCTCATGCATCTTTTAACATCACGCTGTAGGCTACTTGCCCCATTGCATCCACTTGGAGAATCCGTGGTAAAAAATACACGTCTTTTCGTTtatcaaaataaaacattttttttcctgtTTTGAAGGGGGGGGAAATAATTGTTGGTTTTGTCCATTTTTACAGCTCTGTCTTCGTTTTACACACCATGGTATCATTGATGTTGGTTCCATCATACACAGTTGTTTGGTTGAAGCTGTGCAAAAGAGTTCTTACTGAAGTCTGGTCTGGTCCAATCAGGAGAGGCTGTGACTGTGACTCATGAGTCAGCGATCACAGCATCCATTACTGCTCACAGAAGTCACCTTACTTGCTCTGTTGACTGTAGGGAGACGAATTGTTGGACGAATCCATTTGCTGCTGTGAACCATTTTCCTGAAGAGGGAAAAACTGTGTAACTTCACATCTTATTATCGTGTATTAGCACCATCAAGTAAGTAATGGCATGGGATGTAAAAATTGTATGTAAAATGGCTGTACTCATGATGAGACATGGATGAATGAGAGGAGATCAACACAATGAGATGGCAAGGACGAGCCTTGGAACTTACGGCTGTCTGCTGCATGTGGGCGTACTGAGGAATATAGGCTGCCTGGACTGCAGCGTTGGCTGAAATATACTGCTGTCataagaaaaacaacaacatattagATACTGTACCCCTCAGAAGTCAGCCAACTCCCAAATCACCGCCTAGTCCTTAGCCTCTGTGCACTTTAGATCGGCGTTTGCATCAGGTAAAATGAGACTAACTAAATTGCACCTCCCCCTTCCCAGAATGCCCCTCACCGCTTTAGATCTGTGTTTGCATCAGGTAAAATGAGACTAACTAAATTGcaccttccccttcccccccctCACCGCTCCACTGCTGCCCAATGAGAGATGGCCCATCTGCTGTGTCATGATGGCGGTGGGCTGCATTGTCATGGAGTGGTCCACAGAGGGCGACATTACAGcctgctgtagcagagagagagacagagattataATTCTAGAATCAATACAAGGTCATCCTCATACTCAAACCCATTGAGGATCAATGGAAGGTCTGCAGGCAAAAGTATCTGGCTTTAAAATGATTGGAATTTGTGGTTAAGTTTAACAGTAATAACTCCTTCATAAAACTGTTTCTGTACAGAGGTGAATAGGGACTGGTTAGACCAAGTGTAGCGCTGAGCGATTAACCGAAATGTTGgttatttaaaccattttaaacAACTACTTGACTGACGTCggttagttgttgttgttggtgagcTCGATGTGCAGTTTCTGTAGaaataaatcagatccagcctgaactgtgcgatgtacTCGGGAGTTGTAGGTTCCAACAAGCCAATATTCGACATAGTTTAGCGAagaaaacatggtaattaactacaatgaccataatccattgtgtGCCCGGTTTAAACTTGTCCGATCTGTGCGGAGTTGACatggagacagagaacagagaacagagaaagtTTCGCAAGTTTGAAAATGCaggatctaagtgattgatagttggttttcagcagtcataaaaagtatgccttatttactttgaatcaaatcaaattttatttgtcacatgcaccgaatacaagcttacttacaagctctaaccaacaatgcagttttaagaaaatacccccaatctcaaaaagcactaatcgctcagcactaaccAAGTGAAACCTGTGACTTCAAGTTTGTTAAATTAATCAGACAAGCTCAGCACCCCccgaaaatacatattttttaggCCTTAGGCCATCTGTATAAGCCAAAACTCCTTGAGGGAGTGCACCATTTCCTTGTCAAAATGAGgggaaacagacacagacacttgTTCTACTTGAAACCATCTGCTGAGAGATGCAAATGGCTTCAGTCATAAGACCGTGTCTGCTGCAGGCATTTCCTGTTGGCTCCATACAGCAGTGGGAGCAGAGAGCTAGAGGCCAGAGAAGCACAGTCGTATTTCGGTTCCAGATCACACCCTATtctctcaaactcaactctggaccatttttcattgttcccctctaatcggactgatttagacctgggacacctggtgggtgcaattaattatcaggcagaacagaaaaccagcaggctccggacctagTAGGGTAAGAGCTGAATAGCCCggccctgttccctacatagtgcacaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666966 lncRNA upstream 1431 21130910 ~ 21131228 (+) True G584711
TU666923 lncRNA upstream 4462 21127904 ~ 21128197 (+) True G584671
TU666897 lncRNA upstream 47644 21084461 ~ 21085015 (+) True G584645
TU666896 lncRNA upstream 48849 21083512 ~ 21083810 (+) True G584644
TU666863 lncRNA upstream 99069 21033342 ~ 21033590 (+) True G584617
TU667050 lncRNA downstream 106468 21243974 ~ 21244173 (+) True G584792
TU667053 lncRNA downstream 113768 21251274 ~ 21254524 (+) True G584795
TU667118 lncRNA downstream 130338 21267844 ~ 21268087 (+) True G584830
TU667089 lncRNA downstream 251789 21389295 ~ 21390450 (+) False G584808
TU667091 lncRNA downstream 251789 21389295 ~ 21392225 (+) True G584808
XM_021608763.2 mRNA upstream 87727 21033870 ~ 21044932 (+) True LOC110527479
XM_036982885.1 mRNA upstream 190934 20893809 ~ 20941725 (+) False LOC110527473
XM_036982929.1 mRNA downstream 39477 21176983 ~ 21183344 (+) True LOC110527484
XM_036981861.1 mRNA downstream 108852 21246358 ~ 21249349 (+) False sumo1
NM_001160594.1 mRNA downstream 108877 21246383 ~ 21249339 (+) True sumo1
XM_036982935.1 mRNA downstream 177500 21315006 ~ 21337432 (+) False LOC110527488
XM_036982936.1 mRNA downstream 178320 21315826 ~ 21333442 (+) False LOC110527488
TU666895 other upstream 50044 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 892862 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1110932 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2155660 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2639750 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 815523 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1219077 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1548983 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1563688 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1872555 23010061 ~ 23015120 (+) True G586685

Expression Profile