RNA id: TU667053


Basic Information

Item Value
RNA id TU667053
length 3251
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G584795
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21251274 ~ 21254524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTCATCGTTTTATTCTGTGAAACTGTACAAGATTACAAGCCATATTGCATTAAGAAACATCAAGTAGAAACAGCAAGATTATAAGTCTTATAAATACATATGTTCTTTTGAAAAAGGGTGAATATTTACAGAATGTGGCAATTTAATAGCAACATCTTACAGCTagactacatcccaaatggcaccctattccctatgtagttcactacttttgaccaggtcccctagggctctggtcaaaagcagtgcactatatagggaatagggtgccatttgggacatacgcactatacacaagcataatacaactttttttttaaaggtgtgTTAGACATTTCTCTCTGTGCCAAGATGAATGTTCTCAGATGTCTGCAAGTTAGCGTAAAAGTAACATCAGCCACACGTAACAAAAACAGGAACATCAATTTAAAAAGTACAGAAGCAAGGAATGAAATGCACATATTCCAAAAACCTTTGGAATTCCTTGCAAAACTTAACATACATTGGTCTTGTCAGACATTAGCCCTGTATCCCTCGTTTCTTCTTGGATGAGAAACTCACGACATGATACAACATAGTTGAAAACATATTGAAAAGTCATGGCAAAACAGACTTTCTTTGTTGCTGCCGTTACATCACTGGGTGGCACATTGTGGTTTAAAAGTCACGTTTAAATGAGATTATAGAATGTTTTAAAATGTCATGGGGGGGTTACTGAAGAGTTAAAACCCTTCAAATAATGAACAAATGTTCAGTCAATGGCTCATAAGGTCGTCAGGAGGGACATTCTCAAAGTACAAGTACTTTTTTCAGAGTTCAAATGTCCTACGTCCAATAGGAGATGGGAAGGGATATGCTCAGTCGGTTTCATCAAAAatagatatttttttaaacacacaacTCCTCCACATTAAACTTCCACAAAGTTCATACGGTCGTCTCTCCTTGGTTGCGGTTACTGAGCCGTTTGTAAAACCTGCACCAACTCTGTAATGTTTTCCCTGACCAGATCCAGAACCCGGACGTGATGCCCACGATCATAGTCATCAGGTACTTGATCATGAACACCGTGAAGTCCGGGGTCATCGGGGCAAAGTTGTTGGCCGGGCACGGCACCGCGAAGCGCTTACACGTCTGCATGTGCCAGGTCTTCTCCCATTGGTCGCGGAAGGCCTGCTCGTAGAAGTAACAGGCGATGACGATGGTGGCGGGGACGGTGTACAGGACGCTGAACACGCCGATTCTCACCATCAGCTTCTCTAGTTTCTCCGTCTTGGTGCCGTCGTGCTTCATGATGGTTCTGATGCGGAACAGAGACACGAAACCGGCCAGGAGGAACGAGGTTCCGATGAAGAGGTAGACGAACAGGGGGGCCAGGACGAACCCTCGTAATGAATCCACGCTGTAGATGCCGACGTAGCACACCCCTGTGAGAAGGTCCCCATCCACCTGCCCCATGGCCAGGATAGTGATGGTTTTGACAGCAGGCACCGCCCAAGCCGCTAGGTGGAAGTATTGAGAGTTGGCCTCGATGGCCTCGTGACCCCACTTCATACCAGCAGACAGGAACCAGGTGAGGGACAGGATGACCCACCATATGGAGCTAGCCATGCCAAAAAAGTAGAGGATCATGAAGAGGATGGTGCAGCCCTCTTTCTTGGTGCCCTGGGCCACCGTCTTGTAACCGTCCTCTTTAAACTTGTCTATGCAGACCACTTTATCCTCCAAGAAGAAGCCTGCTGTGTAGGCCACCGCCACCATGAAGTAGCAGCCTGAGAGGAAGATGATGGGCCTCTCCGGGTAGCGAAACCTCCTCATGTCTACCAAGTATGTGAGCACAGTGAACAGTGTACTCACGCAACACAAGATAGACCAGATACCCACCCAGAGTTTGCCGAATTTCAGTTCCTCCTCGCGGAAATACATTAGTCCGTTGGGCTTGGTGGACTCGCATGGGGCACCACAGTCTTTCACCCCCAGGAATTTGTAGTTGAGGTAGGTTGGGACCTGAAGTTGTAGGGGACAGGAGAAGGGCTGGGCAGCAGGGCGACCGATGTTTGGGGGTAGGGTCATGAGCTCAGGCAGGTTGGGAGTGGGGTCCGAGGTAGGGATGTCCGTGTCTGAAGTGTTTTGACCCACACAGATCTCCCCAGCGCCGTGGACGGGGAAGTTCTCACAACGGAGTCTCTCTGGCCATTGAAACCCGAACTTGTTCATGAGCGCCTCGCAGCCCTGGCGTGCGCGCTCGCACAGTGATCGGCATGGGGGGATGGCCTGTTCTAGAACTGTGCACACCGGTGCGTACATGGAACACAAGAAAAACTTCAGGTCCATGGAACACTGGACCTTCACGAGCGGGTAAAACTGATGGACTTCCAGCCCCGCATCCTCCTGGTTTGTGTGTCCCAAAAGATTCGGCATGATAGTTTGATTATAGGCAATGTCCGTGCAGAGGGGGATGGAAATTGGCTGACAAAAACCGTGTTCTGGTATAGAAATTCCTTTCTCGCCATGATACTGACCGGTACACGGCTCCAGCATTAGACAAACAGTCACCAGCGCGCACCCCGTTATCCAAATCCACTCACAGGTTCTCCTTACCGCCATGATAGCAGCCCCTGTGTTCAGAATAAAAAAAGTGGCTTAGAATATTACCCCGGAGCTGCAAAAAGCACAAATCAATTTCAGTCCACAAAAGGTTGAAATGTCCTCTCTTCTCCCGTCTATATAAAAAGGGAGAGGAGCCTAAAGTTAAAACAAAGTTAAATGCTTGAAAAATGCCCTCGGTCGCTCTCCCCACATTCCTTATTCCAGTGTTCACAGAACTCTCCAAGAAAATGGAGGATTGCTGGTGAGGGATTTATTTATTCCAATCAAACCACTGAAAACCTGTGAAATTCCAAtagagtatttttttttttgcagttcgTTTCTTTACTGACCTGGTTCTTCGTATTGGAAACAAACGTATGACTTGAAAATGGAATGCGTTGACTAATTTCTTCCAGATACCCACAAATCTTCCTTACATCACATTATAGGTTGAAGCAAAATTGAAGTCTGCAAAATCTCATGGTTTTCCATCTCGCGTTTACAACTCAGCCAATGTTCAGCTCGAAGAGCATTGGTAGGCTATGCACTACGATTAACCCGGCTCAAAGTCTGTAGTAAAAGGCAAATCTCTTCCAAAAGTATACTACTCGTCAAACTATTTCTTCCCACAACGCTAAAATCGTGATCTGCTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667050 lncRNA upstream 7101 21243974 ~ 21244173 (+) True G584792
TU666969 lncRNA upstream 113768 21132659 ~ 21137506 (+) True G584714
TU666966 lncRNA upstream 120046 21130910 ~ 21131228 (+) True G584711
TU666923 lncRNA upstream 123077 21127904 ~ 21128197 (+) True G584671
TU666897 lncRNA upstream 166259 21084461 ~ 21085015 (+) True G584645
TU667118 lncRNA downstream 13320 21267844 ~ 21268087 (+) True G584830
TU667089 lncRNA downstream 134771 21389295 ~ 21390450 (+) False G584808
TU667091 lncRNA downstream 134771 21389295 ~ 21392225 (+) True G584808
TU667108 lncRNA downstream 139359 21393883 ~ 21438876 (+) True G584820
TU667169 lncRNA downstream 185826 21440350 ~ 21441601 (+) True G584881
XM_036981861.1 mRNA upstream 1925 21246358 ~ 21249349 (+) False sumo1
NM_001160594.1 mRNA upstream 1935 21246383 ~ 21249339 (+) True sumo1
XM_036982929.1 mRNA upstream 67930 21176983 ~ 21183344 (+) True LOC110527484
XM_021608763.2 mRNA upstream 206342 21033870 ~ 21044932 (+) True LOC110527479
XM_036982886.1 mRNA upstream 309549 20893809 ~ 20941725 (+) False LOC110527473
XM_036982935.1 mRNA downstream 60482 21315006 ~ 21337432 (+) False LOC110527488
XM_036982936.1 mRNA downstream 61302 21315826 ~ 21333442 (+) False LOC110527488
XM_036982930.1 mRNA downstream 61302 21315826 ~ 21337432 (+) False LOC110527488
XM_036982931.1 mRNA downstream 61302 21315826 ~ 21337432 (+) False LOC110527488
XM_036982932.1 mRNA downstream 61302 21315826 ~ 21337432 (+) False LOC110527488
TU666895 other upstream 168659 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 1011477 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1229547 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2274275 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2758365 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 698505 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1102059 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1431965 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1446670 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1755537 23010061 ~ 23015120 (+) True G586685

Expression Profile