RNA id: TU667091


Basic Information

Item Value
RNA id TU667091
length 1325
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G584808
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21389295 ~ 21392225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aTTAAGATTTATTGTGGTAATCTTCCTTTTTACAGACTATATACACAAGTTAGTTACCACATGGTCCGTTTTCAGACGGACCTGTGGTGTGAGATTCCTCTTGTTTCATCGCACTGTACTGGTGACAGCTGATACAAAAATCATTCATTTTCTATGCTAAAGTATGCATACTCTTATTGAGTTTATATTTCATCAATCTAGTTATATACCTTAACATTGTAATTAACTGACTTAAGTGTCTGTTTAAACACTTTCTTTAACATTAATAAACCCCCGAGTAAAGATAGAAAACAATTCCCACAAAACATAGAAAAGCTGAACACATCTTATTCTTTGAAGAGTTGACCCCAAATGAAATGGTATTTACTTCACACAAAGTGGAAAATTCATTAGTTTTACACCTTATACAACAGTATTGACTTGGAATCAACTGAACCACTCTTCCTCAAAACTACCAGCAGTACAGAAGAGTAAAGGATCTATGAGGGGTGAtacgggggagagagaagggttaaAAATCTCACTGTAGACAGTGAGTGAAACTATACATGGGTTGTCTGAAGTAgccagtcccctctcccttctaAGGCTCACAGATGATTGTCTCGACCACAAACTTGTTCTCAAAGTGACGGATCGTCCTGCAGTTCAGGGCTTCACGCTTTTCCCTGCCTACAAGGTAAAGATGAAGGAGGATGTATCAAAAATGTGCATGTAGGCCTATACAAACATCTTCTATAGCAAAATACAAAATGGTTAATACATGAAAATTCAGGGTAAATcttaaaaagtgtgtgtgtagtactaacccagtacggtgtgtgtgtgggtggcacTAACCcggtacggtgtgtgtgtgggtggcacTAACCCGGTACACTGTGGGTGGCACTAACCCGGtacggtgtgtgtgggggtggcaCTAACCCGGTACGgtgtgtgtgtgtgggtggtactAACCcggtacggtgtgtgtgtgtgggggtggtaCTAACCCGGTATGGTGTGTGTGGCACTAACCCAGTATGGTGTGCGTGTGGCACTAacccagtatggtgtgtgtggcactaacccagtatggtgtgtgtggcactaacccagtatggtgtgtgtggcactaacccagtatggtgtgtgtggcactaacccagtatggtgtgtgtgtGCGTGTGTGTGGCACTAacccagtatggtgtgtgtgtgtggcactaacccagtatggtgtgtgtgtgtGTGTGGCACTAacccagtatggtgtgtgtgtgtgtgtgtggcactaacccagtatggtgtgtgtgagtgtgtggcactaacccagtatggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667118 lncRNA upstream 121208 21267844 ~ 21268087 (+) True G584830
TU667053 lncRNA upstream 134771 21251274 ~ 21254524 (+) True G584795
TU667050 lncRNA upstream 145122 21243974 ~ 21244173 (+) True G584792
TU666969 lncRNA upstream 251789 21132659 ~ 21137506 (+) True G584714
TU666966 lncRNA upstream 258067 21130910 ~ 21131228 (+) True G584711
TU667108 lncRNA downstream 1658 21393883 ~ 21438876 (+) True G584820
TU667169 lncRNA downstream 48125 21440350 ~ 21441601 (+) True G584881
TU667212 lncRNA downstream 139175 21531400 ~ 21531633 (+) True G584919
TU667216 lncRNA downstream 149899 21542124 ~ 21542360 (+) True G584923
TU667252 lncRNA downstream 203221 21595446 ~ 21595685 (+) True G584959
XM_036982964.1 mRNA upstream 541 21374203 ~ 21388754 (+) False LOC110527491
XM_036982947.1 mRNA downstream 12342 21404567 ~ 21433139 (+) False LOC110528813
XM_036982948.1 mRNA downstream 12342 21404567 ~ 21433139 (+) False LOC110528813
XM_036982949.1 mRNA downstream 12342 21404567 ~ 21433139 (+) False LOC110528813
XM_036982950.1 mRNA downstream 24048 21416273 ~ 21433139 (+) False LOC110528813
XM_036982951.1 mRNA downstream 24048 21416273 ~ 21433139 (+) False LOC110528813
TU666895 other upstream 306680 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 1149498 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1367568 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2412296 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2896386 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 560804 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 964358 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1294264 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1308969 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1617836 23010061 ~ 23015120 (+) True G586685

Expression Profile