RNA id: TU668434


Basic Information

Item Value
RNA id TU668434
length 260
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G586044
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22315743 ~ 22316002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatttcctgcaagacaggaatgtagGTGTTCTAagatggccagcgaagagcccggatctcaatcccattgagcatgtctgctacctgttggatcggagggtgagggctagggccattgaGAATGCTCTTGTAGAGTTGTGGCAGGTTTAGAACTTCGCACTTGTATTGACTAGTAGTATTCACCAGTATGTGAACGCTCTCCCTGTATAGTTGTATCATTTTGGGCAGGTTGATCTTGTCTCCCCAAAGCAGCCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668433 lncRNA upstream 24 22315480 ~ 22315719 (+) True G586043
TU668423 lncRNA upstream 3705 22311710 ~ 22312038 (+) True LOC110527508
TU668421 lncRNA upstream 26408 22289047 ~ 22289335 (+) True G586031
TU668240 lncRNA upstream 84902 22229724 ~ 22230841 (+) True G585855
TU668239 lncRNA upstream 85684 22227672 ~ 22230059 (+) False G585855
TU668435 lncRNA downstream 143 22316145 ~ 22316373 (+) True G586045
TU668437 lncRNA downstream 1074 22317076 ~ 22349230 (+) True G586047
TU668471 lncRNA downstream 52671 22368673 ~ 22370163 (+) True G586079
TU668473 lncRNA downstream 62380 22378382 ~ 22384934 (+) False G586080
TU668474 lncRNA downstream 62380 22378382 ~ 22384934 (+) True G586080
XM_021608824.2 mRNA upstream 3905 22290515 ~ 22311838 (+) False LOC110527508
XM_021608818.2 mRNA upstream 489718 21812987 ~ 21826025 (+) False sts
XM_021608819.2 mRNA upstream 489718 21815880 ~ 21826025 (+) True sts
XM_036982998.1 mRNA upstream 490857 21813020 ~ 21824886 (+) False sts
XM_021608817.2 mRNA upstream 525564 21762128 ~ 21790179 (+) True LOC110527503
XM_021608825.2 mRNA downstream 11569 22327571 ~ 22347037 (+) True mxra5a
XM_021608827.2 mRNA downstream 40498 22356500 ~ 22360232 (+) False c7h10orf53
XM_036983001.1 mRNA downstream 69868 22385870 ~ 22416150 (+) False LOC118936317
XM_021608840.2 mRNA downstream 76651 22392653 ~ 22416150 (+) False LOC118936317
XR_005052551.1 mRNA downstream 76680 22392682 ~ 22410880 (+) False LOC118936317
TU667948 other upstream 362474 21953029 ~ 21953269 (+) True G585573
TU666895 other upstream 1233128 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 2075946 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 2294016 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 3338744 18976678 ~ 18976999 (+) True G581976
TU668464 other downstream 40581 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 370487 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 385192 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 694059 23010061 ~ 23015120 (+) True G586685
TU670005 other downstream 1295350 23611352 ~ 23621369 (+) False LOC110527540

Expression Profile