RNA id: TU668483


Basic Information

Item Value
RNA id TU668483
length 3091
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G586086
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22455087 ~ 22458177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgctgcagcaccctcactTCCCACGGCTAtgagggcacctattggtagatgggtaaaaaataaaaaagcagatgttgaatatccctttgagcatagtgaagttattaattacactttggatggtgtatcaatacacccagtcgctacaaagataaaggcgtccttcttaactcagttgctggagaggaaagaaaccgctcagggatttcaccatgaggccatggTGACTTTTAAACAGTGAAatagttgaatggctgtgataggagaaaacttagcatggatcaacaacattgtagttactccacaatactaacctaattaacagagtgaaaaggaagcctgtaccgaataaaaatattacaaaacatgcatcctgtttgtaacaaggcactaaagtaacactgcaaaaaaaaTTGCAAAGCAATTaaccttttgtcctgaatacaaagtgttattggATTTGCCTCGAACATAACACAttattgagtaccactctccatattttcagacgtagtggtggctgcatcatgttatgggtatgcttataaTCATGAAGGACTGGGgattttttcaggataaaaaaaatacatgggAGTAGAGgtaagtacaggcaaaatcctagaggaatgcctggttcagtctgttttccaccagacactgggagatgaattcacagttcagcaggacaataatctcaaacacaaggccaaatctacactggagttgcttaccaagataacAGTGAATTTTCCGGAgaggccgagttacagtttggacttaaatctacttgaaaaactatgacaagacctgaaaatggttgtctagcaaggatcaacaaccaatttgaacaGAGCttgaatattattatttttttttaaatgggcaaatgctgtacaatccaggtgtggaaaatctcttagagatttacccagaaagactcacagctgtaatagcagccaaaggtgcttctacaaagtattgactcaggggtgtgaatacttttgtcATTGAGATatttatgcatttttttttatattacatttgcaaacatttctaaaaacatgttttcacattgtcattatggcgtattgtgtgtagattggtcaGAAAcacatatatttaatcaattctgaattcaggctgtaacgcaacaaaatgtggaataagtcaaggagtatgaacactttctgaaggcactaaatGTACACTAgtctctcttgctcactctcaGCTGAGCTAGGCTCTCCTGGGTCGGCAAGCCTGAGCTTGTTGATATAAAACAGAACAGAGGGTAACCTACAACTTGATACCAGACGACTGCAACCTTAGACAACTCAAAATAAGGAGCTATCAGGTCAAAAAAATGTACCTTTTTTAAACATGAATAGGAATGAAACCTGATCTTTCATCACTATAAACAGTCGGCCTACCATGCACTCTACAACCGCGTACCTTGTGACACAGAAATCTCCTCTACTGACCCTGATTACAGACGTAAAAGACCAGAGGCCTTTTCGTTGGCCTCCAATCGTCCACTTGAACACAAAGAGGAAGTCAATTCCCATCTCAAAGTCTTTCAGGTGGACTGAATGGCATCAACCGCAGGAAAGCTGGATCAATAACAGTTTAAAATCAAAGTGCTTTAAGCAACGTAAATATAAAAGGGAGAATAAACGAATAACAGTCTGACAGTAATAAGATAGAATTGTTCCCAAGCGTTGTGAAATCAATGACATTGTTTCTACCATGTGGTGAAATAACTTGACGTTTAAACACTTCCCACTAGGCAAAAACAGGTCGAGTCAACCTGGTTCCCAAGTCATTTcaaccaacaacaaaaaagtaaatATGAAGGCATCAAATCAACGAGGGAAACTGATTGGCTTTGAAAAAAAGTAATCAATGTAAGTTAATCGTATCTTTTTAaatcacccaacttttaacctaaatccaatgacattgtgtcattttttgttgatttcacactGAATTCAAATTAGTTCAACTCAACCAAAACTAGATGTTAAAATGACATCTTTGCCCAGTGGGTTACAGACAGCTTTACATGTACGCTAAGGGTTCAAGCAGACGAACAATAAGACCTACTTGGCTACTTCGGAATGATAAGACATACATCACATACATTTTTTAGCCTAACCAGGGGTGACAATCTGGCCAGTTACTCAATAGATCATGTAATACCATATTCTGTTAGTTCAGTATATTCATATAATGCCTAGAGGAAAACCCTTAAGTATGTGTAACACCAGACTTGGCCTatgccacaaaaaaaaaacataaacacTTGTAACATCAAACTATACCCCATTGTGTCAGTCATTCTGCACTGTAGTAGTTGATTTGCTCTTTGTCGAGTGAATTTAGGGGCTATTCCTCAGCCAAACAGATTTGACATGGGTCTGGATTTAAATGAGCTTTTCCTGGACCCGTTAAGCTCCTCTGTCTCACAGTGTGCTGGGAACGAAGTGCTGTGAACTATCTGCGAAGATCTGAAGCGGATCTTCTGGAGTTTGGGCCTCATCTTGCTAAAGGACGATTTCCTCAGCAAGGGTTTCTGTCTGGCCTGGTCTACTCCATCACCTGTGTCCTCCTCGCTGTGATTGTGCAGTTTGAGGGGCATCAGATTAGACTGGAGAACTTTAGACAACCTCCAACGCCCCCCATCCCCATAGTCTGTGTTCTCTGAGTCCGAGTCGCCGCCAACACCCGCCCCGATGATGTCACGGATATCAACGGCCACACTGTTTGTAAGATACTGACACGCCCTTTTCCCATTATAATCTCTGGCCTCTAAGTCTGCGTCATAGGCACCTACCAGTAACTTCACCACCTCAACTTGGTTGTGCATTGCTGCTAGGTGTAGGGGCGTGTAGCCGGCACTTGATCGGGCATTGATGTTGATGGGCACTGTGTGTTGTTTGGCAAAGTTCACGAGAAGCGCTAGCAGCTCTTGTTTGCCCTGCTTTGCGGCCCAGTGCAGGCAGGTGAACCCAGTCACAAAATCCTTCTTCATGACAAGGTTTGGttcagaggaaaggagagggtggAGACTCTCCCATTGGCCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668508 lncRNA upstream 2526 22452319 ~ 22452561 (+) True G586111
TU668502 lncRNA upstream 8822 22445957 ~ 22446265 (+) True G586105
TU668501 lncRNA upstream 10899 22443876 ~ 22444188 (+) True G586104
TU668480 lncRNA upstream 39217 22409982 ~ 22415870 (+) True LOC118936317
TU668473 lncRNA upstream 70153 22378382 ~ 22384934 (+) False G586080
TU668548 lncRNA downstream 67702 22525879 ~ 22526520 (+) True G586148
TU668639 lncRNA downstream 151784 22609961 ~ 22611689 (+) False G586229
TU668636 lncRNA downstream 151927 22610104 ~ 22611689 (+) True G586229
TU668651 lncRNA downstream 159766 22617943 ~ 22627272 (+) True G586236
TU668671 lncRNA downstream 217297 22675474 ~ 22676432 (+) True G586256
XM_036983001.1 mRNA upstream 38937 22385870 ~ 22416150 (+) False LOC118936317
XM_021608840.2 mRNA upstream 38937 22392653 ~ 22416150 (+) False LOC118936317
XM_036983002.1 mRNA upstream 38937 22392820 ~ 22416150 (+) False LOC118936317
XR_005052551.1 mRNA upstream 44207 22392682 ~ 22410880 (+) False LOC118936317
XM_021608827.2 mRNA upstream 94855 22356500 ~ 22360232 (+) False c7h10orf53
XM_036983006.1 mRNA downstream 2133 22460310 ~ 22470522 (+) False LOC110527515
XM_021608838.2 mRNA downstream 2538 22460715 ~ 22470522 (+) False LOC110527515
XM_021608839.2 mRNA downstream 2544 22460721 ~ 22470522 (+) True LOC110527515
XR_005052552.1 mRNA downstream 162826 22621003 ~ 22633391 (+) False LOC110528815
XM_036983008.1 mRNA downstream 162826 22621003 ~ 22634558 (+) True LOC110528815
TU668464 other upstream 94860 22356583 ~ 22360227 (+) True c7h10orf53
TU667948 other upstream 501818 21953029 ~ 21953269 (+) True G585573
TU666895 other upstream 1372472 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 2215290 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 2433360 20017855 ~ 20021727 (+) False LOC110528807
TU668616 other downstream 228312 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 243017 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 551884 23010061 ~ 23015120 (+) True G586685
TU670005 other downstream 1153175 23611352 ~ 23621369 (+) False LOC110527540
TU670007 other downstream 1153175 23611352 ~ 23621369 (+) False LOC110527540

Expression Profile