RNA id: TU668978


Basic Information

Item Value
RNA id TU668978
length 1328
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G586522
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22620999 ~ 22624553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGTTTTCTTACATGACCAATATAAAGCTACCATGTGTGTTGTGTTAATCACACCAGACCACTACTAACGGTTTCCTTCTGCTGTGCCAACAGGTAATCCACTTTCTGTATCTCCCATGCCTACTCACCTTTTTGTTCCGGCCCTCGGAGAAGTTGGGCACACACTCCACCAGCTTAGCCATGATGCGTAATAATCACAGAGTCGGGGCAGCTGGCAGTGATTCCCAGGCTGCTCTAGTCTAATATTTACCAGGACCTGGTGCGGATGGTGCCAGCCTCCCATGCAACATTCACAGACACAAATCCCTGATTCACCATAGGTTAGACTTAAATACTGGAGCACCAGATGCGAAGGGTGAAGGAATAAATCCAGTATGATCAAAGGAAGTATCCAAGCTGACAGACGGATAGCTGGTGAACTCTCCACTCTAGCTGTTACCTCTGCGTTCTCACCACAGCCATAGTAAACACTTGGCTAAGTCCTATTAGATGAGATCTCAGGATCAGAGATGTCAATTTCAATAATTATGATTGAAATGTGAAGTGGTGCACAGATCTAGCCCCACCGCTGCATTACGATATTGCATTCATTGTGTATTCATCTCTTGTATTTATGGTATGCAGAGTTTCTGAACATTTTGGTACCAGTAACACTGTTTCCTAAATAGTACACAAAATATGCACCATCACCAATAGGATTTCTTAAATCTGAATCAAAAAGCTTCATGTTGGTTATTATTAGCTATGGCAGTAGTGACTCTTTTATAGCCTCTGTGAACTTTGATCCAAAGGATTAAAAAGTCTATAATGGTCAAACATACTCAGCAGTCAGCATTGATCTAGGTGATCAAAGCATTACTCAGCTAAGTAGCAGTCAAGCAGGCCAATTCTTATTATCCACATTGACAGGTCAACTAGTTTGTTTTTATACAAGATGTATCCTACTGCTTTGGTTTTGTTACGCTGAAGATGCAACCACTGAGGCTATAGGCTGTGCTATCCAGCCCAGTGTTTCAGAAACCTTTTTCTGTGCTAGGGACTGTGTTCTAGCCAACTGTTGAAGGATTAACTAACATCAATTAATGAACACCTGTCTATGGTTGCATCACATCATCCTCCCCcaaaacaaacaaatacagttggCTGGACTGGTTAATGAGTAATGCTGCAGAGGGGATCTGGATGGATTGAGCTGCTTTTTTAGAACTGGGCACTAAACAGACAAATATTTGAGCATTTATTGGTGCAGTGGAACACTCCTCCTACTACCTGGTCCTATTGGCATACATGAACTTCAATGCCTATGAATAAAAACAGATCATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668940 lncRNA downstream 15966 22564482 ~ 22605033 (-) True G586488
TU668834 lncRNA downstream 77418 22486284 ~ 22543581 (-) True G586398
TU668852 lncRNA downstream 155558 22464771 ~ 22465441 (-) True G586414
TU668847 lncRNA downstream 166175 22454261 ~ 22454824 (-) True G586411
TU668841 lncRNA downstream 174818 22445948 ~ 22446181 (-) True G586405
TU668995 lncRNA upstream 63056 22685565 ~ 22685824 (-) True G586539
TU669000 lncRNA upstream 65190 22687699 ~ 22703875 (-) True G586541
TU669004 lncRNA upstream 69172 22691681 ~ 22692118 (-) True G586543
TU668936 lncRNA upstream 101361 22723870 ~ 22724435 (-) True G586485
TU669031 lncRNA upstream 150898 22773407 ~ 22773606 (-) True G586570
XM_021608853.2 mRNA downstream 751 22609884 ~ 22620248 (-) False LOC110527522
XM_021608854.2 mRNA downstream 758 22609890 ~ 22620241 (-) False LOC110527522
XM_021608849.2 mRNA downstream 11530 22587846 ~ 22609469 (-) False plcd4a
XM_021608850.2 mRNA downstream 11530 22587846 ~ 22609469 (-) True plcd4a
XM_021608852.2 mRNA downstream 33331 22563281 ~ 22587668 (-) True fam207a
XM_021608237.2 mRNA upstream 15581 22638090 ~ 22668102 (-) False stat1-2
NM_001124746.1 mRNA upstream 15963 22638472 ~ 22657391 (-) True stat1-2
NM_001124576.1 mRNA upstream 55939 22678448 ~ 22679952 (-) True mstn2a
XM_021608856.2 mRNA upstream 102770 22725279 ~ 22746080 (-) False glsa
XM_021608859.2 mRNA upstream 104451 22726960 ~ 22735701 (-) False glsa
TU668953 other downstream 883 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 150481 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 526660 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1102126 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1196414 21421454 ~ 21424585 (-) True G585240
TU669046 other upstream 186144 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 461981 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 539385 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 752503 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 2205979 24828488 ~ 24828700 (-) True G588987

Expression Profile