RNA id: TU669331


Basic Information

Item Value
RNA id TU669331
length 1612
lncRNA type intronic
GC content 0.47
exon number 3
gene id G586843
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22959662 ~ 22987542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagacaacacccttcaggttggaggtagagaggagacgcagtgacataaagaacacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaagcacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtggcataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacaaagaaaacacccttcaggttgaaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataacgaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669335 lncRNA downstream 994 22953342 ~ 22958668 (-) True G586844
TU669051 lncRNA downstream 139880 22819543 ~ 22819782 (-) True G586590
TU669045 lncRNA downstream 151419 22807830 ~ 22808243 (-) False LOC110527529
TU668930 lncRNA downstream 161216 22798229 ~ 22798446 (-) True LOC110527527
TU669038 lncRNA downstream 164736 22794682 ~ 22794926 (-) True G586577
TU669327 lncRNA upstream 8013 22976588 ~ 22977809 (-) False G586843
TU669330 lncRNA upstream 8013 22976588 ~ 22987542 (-) False G586843
TU669333 lncRNA upstream 11239 22979814 ~ 22987542 (-) True G586843
TU669338 lncRNA upstream 23847 22992422 ~ 22994686 (-) True G586845
TU669369 lncRNA upstream 93604 23062179 ~ 23062671 (-) True G586872
XM_021608871.2 mRNA downstream 51524 22832299 ~ 22908138 (-) False ahr1b
XM_021608872.2 mRNA downstream 51524 22832430 ~ 22908138 (-) True ahr1b
XM_036983015.1 mRNA downstream 99566 22832430 ~ 22860096 (-) False ahr1b
XM_021608869.2 mRNA downstream 146756 22807676 ~ 22812906 (-) False LOC110527529
XR_005052553.1 mRNA downstream 152165 22799749 ~ 22807497 (-) False LOC110527527
XR_005052554.1 mRNA upstream 79456 23048031 ~ 23053093 (-) True LOC118965270
XM_036983016.1 mRNA upstream 97414 23065989 ~ 23098609 (-) False LOC118965271
XM_036983018.1 mRNA upstream 97414 23065989 ~ 23098609 (-) False LOC118965271
XM_036983019.1 mRNA upstream 97414 23065989 ~ 23098609 (-) False LOC118965271
XM_036983020.1 mRNA upstream 97414 23065989 ~ 23098609 (-) False LOC118965271
TU669046 other downstream 147159 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 339546 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 489144 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 865323 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1440789 21517395 ~ 21518873 (-) True LOC110527499
TU669376 other upstream 115915 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 193319 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 406437 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 1859913 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 2003038 24971613 ~ 24979107 (-) True G589093

Expression Profile