RNA id: TU669338


Basic Information

Item Value
RNA id TU669338
length 1992
lncRNA type intronic
GC content 0.48
exon number 3
gene id G586845
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22992422 ~ 22994686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATGTCATATACACAacataggtgcagtgaaatgtgttttttttttaccaggtcagccatagtagtacgaaACCCCTGGAACAAATTATAGTTAAATGCCttcctcaagggcacattgagttgtttcaccttgtcagctcaggtattcaaaccagcgacctttcggttactggcccgatggtctaaccgccaggctacctgaCTTGTCTACGGCGTCAGTAAACCCGGCTGTTATCCAGACGTAGTCCATAATCTTGTCGAACAGCATTTGGACTGTAATGTCCCTCTAGTCTGCTTCCACACTATCATTAACTCATGACCTACTGCACCTCCGGGTGGGCAACTTGTTGCACTCCAGATCAGATCAGCTGGCTGGCATGCCCTGCCTGGCGTGACCTTGTTTTGTTATCCTCATCATGCCAGTGTCTCCGTGGGCATGAGAGCATAGCTAACAGCCTTCATTCATTTGGCTCTGCCCTGATGAATTCAAATCACAGCAGAATGGACGGCTTGTTCAGACTCACTGCGTTCCTTGTGTAAACCATGCTGTACTTTTGGCAAGCACCCACAGCCATTATGGAAGCATTCAACAACCTTTTAAGTGCCTGGCTGGCACAGTGGCAGAGGCAGAATAGAGGTGTGGGTACAGAGGCAGAATAGGTTTGTGGGTACAGaggcagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataagtgagTACATGTGTACTAAGGTgtggagaatcagagcaggtggtcagtccagttcagtccaatccagttcaagtgttcagcagtgtaatggcttgtagatagaaactgtctctgagcctgttggtatcagacctcatgcgcTGATGCCTTCTGCCCGACTGTAAGGTAGAGAACAGCTTGTGGCTGTGGTGtgtggggttaaggttagggttaggtttagggttaggtttagggttaggggttagggaaaataaaatgggattttgaatgggaatcaattgtcgGTTTCTAaaaagtcctcacaagtatagtaagacatagttgtgtgtgtgtgtgtgtgtctgtgtttatgcctgcttgagtgtgtgcatgcatgcttgtgtgtgtgtgcctgtgtcttaGCATGTGTCTGGTGTTTCTCAGTAATCGTCCTCACCCTCCGTCCCCCGTCCCCGGGTCCAGAGATCAGTTTGAAGTTTGAAGCCCCCCAGCTTTGGTTGTCTCTTTCTCAGCTCTATGTGCAGCTGGTGCTGCAGCTGGTGCTACAGCGAtagtgccatttgggaagtctACAGTGTCAGTCAGACGCCAGCTGCTCTGCTCTGTACTGTAGGAAACCAAGCAGCCCTCAGCACAGAGCAGCACTCCCCTGGCACAGCACCAGCATTTACCTAACCTTATGGAGATGAATCAAGAAACCCAGCCATGTTTACATAAGCTAAGTGTCTTCAGGCACAAATCCACCATCCACAAGAAAAAcgcccttcaggttggaggtagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagacgcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacataaagaaaacacccttcaggttggaggtagagaggagactcagtgacaaagaaaacacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669329 lncRNA downstream 4880 22959662 ~ 22987542 (-) False G586843
TU669330 lncRNA downstream 4880 22976588 ~ 22987542 (-) False G586843
TU669333 lncRNA downstream 4880 22979814 ~ 22987542 (-) True G586843
TU669327 lncRNA downstream 14613 22976588 ~ 22977809 (-) False G586843
TU669332 lncRNA downstream 22322 22959662 ~ 22970100 (-) False G586843
TU669369 lncRNA upstream 67493 23062179 ~ 23062671 (-) True G586872
TU669373 lncRNA upstream 77857 23072543 ~ 23082380 (-) True G586876
TU669374 lncRNA upstream 78663 23073349 ~ 23083164 (-) False G586877
TU669375 lncRNA upstream 78840 23073526 ~ 23083164 (-) True G586877
TU669390 lncRNA upstream 109491 23104177 ~ 23104473 (-) True G586890
XM_021608871.2 mRNA downstream 84284 22832299 ~ 22908138 (-) False ahr1b
XM_021608872.2 mRNA downstream 84284 22832430 ~ 22908138 (-) True ahr1b
XM_036983015.1 mRNA downstream 132326 22832430 ~ 22860096 (-) False ahr1b
XM_021608869.2 mRNA downstream 179516 22807676 ~ 22812906 (-) False LOC110527529
XR_005052553.1 mRNA downstream 184925 22799749 ~ 22807497 (-) False LOC110527527
XR_005052554.1 mRNA upstream 53345 23048031 ~ 23053093 (-) True LOC118965270
XM_036983016.1 mRNA upstream 71303 23065989 ~ 23098609 (-) False LOC118965271
XM_036983018.1 mRNA upstream 71303 23065989 ~ 23098609 (-) False LOC118965271
XM_036983019.1 mRNA upstream 71303 23065989 ~ 23098609 (-) False LOC118965271
XM_036983020.1 mRNA upstream 71303 23065989 ~ 23098609 (-) False LOC118965271
TU669046 other downstream 179919 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 372306 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 521904 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 898083 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1473549 21517395 ~ 21518873 (-) True LOC110527499
TU669376 other upstream 89804 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 167208 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 380326 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 1833802 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 1976927 24971613 ~ 24979107 (-) True G589093

Expression Profile