RNA id: TU670261


Basic Information

Item Value
RNA id TU670261
length 286
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G587666
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23819601 ~ 23819886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAGCCCTTGtttctctccagacctgaatgcccttgaccagcacaaaaacatcctgtggcgttctgcattagcatcgaatagcccccgtgatatgcaacttttcagggaagttaggaaccaatatacacaggcagttaggaaagctaaggctagcttattcaagcagaaatttgcatcctgtagcaaaaactcccaaaagttctgggacactgtaaagtccatggagaataagagcacctcctcccagctgtccacagcactgagactaggaaacactgtcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU670260 lncRNA upstream 526 23818853 ~ 23819075 (+) True G587665
TU670250 lncRNA upstream 15885 23803416 ~ 23803716 (+) True G587655
TU670249 lncRNA upstream 17529 23801777 ~ 23802072 (+) True G587654
TU670238 lncRNA upstream 28595 23790546 ~ 23791006 (+) True G587643
TU670232 lncRNA upstream 43656 23775113 ~ 23775945 (+) True G587637
TU670262 lncRNA downstream 365 23820251 ~ 23820584 (+) True G587667
TU670265 lncRNA downstream 3241 23823127 ~ 23823349 (+) True G587670
TU670355 lncRNA downstream 57084 23876970 ~ 23932317 (+) True G587758
TU670471 lncRNA downstream 120272 23940158 ~ 23941432 (+) True G587847
TU670500 lncRNA downstream 151867 23971753 ~ 23972009 (+) True G587876
LOC110527540 mRNA upstream 198550 23609520 ~ 23621051 (+) False LOC110527540
XM_021608882.2 mRNA upstream 502131 23306816 ~ 23317470 (+) False LOC110527538
XM_021608883.1 mRNA upstream 502131 23307926 ~ 23317470 (+) True LOC110527538
XM_021608881.2 mRNA upstream 529787 23271803 ~ 23289814 (+) True aox6
XM_021608880.2 mRNA upstream 588867 23227353 ~ 23230734 (+) True LOC110527536
XM_036983026.1 mRNA downstream 489952 24309838 ~ 24352001 (+) False LOC110527542
XM_036983027.1 mRNA downstream 489952 24309838 ~ 24352001 (+) False LOC110527542
XM_036983028.1 mRNA downstream 494124 24314010 ~ 24352001 (+) True LOC110527542
XM_036983030.1 mRNA downstream 538782 24358668 ~ 24373759 (+) False LOC110527543
XM_021608888.2 mRNA downstream 538783 24358669 ~ 24375752 (+) False LOC110527543
TU670255 other upstream 11601 23807722 ~ 23808000 (+) True G587660
TU670005 other upstream 198232 23611352 ~ 23621369 (+) False LOC110527540
TU670007 other upstream 198232 23611352 ~ 23621369 (+) False LOC110527540
TU670023 other upstream 198367 23611352 ~ 23621234 (+) True LOC110527540
TU669156 other upstream 804481 23010061 ~ 23015120 (+) True G586685
TU671438 other downstream 1084445 24904331 ~ 24905581 (+) True G588755
TU672520 other downstream 1783719 25603605 ~ 25608606 (+) True G589734
TU672748 other downstream 2184044 26003930 ~ 26025309 (+) True G589933
TU673811 other downstream 2732668 26552554 ~ 26553542 (+) True G590936
TU673831 other downstream 2757521 26577407 ~ 26577933 (+) True G590949

Expression Profile