RNA id: TU671678


Basic Information

Item Value
RNA id TU671678
length 2653
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G588974
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24800110 ~ 24802862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccaatcaaattttattttcaACATTTAAGACAATACACTTCTCATACCTTGATAACAATACATTGTCATCAACATTATTCTACGGTAGTTGTTGTAATATATTACTTATACTCCTTTCAAATATTTCAACATATTCACATACTGTACTTTATCAGTTAAGACTTTGCTCATTAAAAAGAAGAGAGAGCATCACTGGTTTTAGAGTGAACATTAAAAGAGCACTACTGTGGGGTAACCGGGGAAAGGAGTGGAGGTACAGGTCGCACGCTATAGGGAAATGACTAGTCATAATCTAAGTCCTCCAACTTGAACAGAGACCCAGCACAAACCCAAAAGCACTCGAGAATAGTACGTTAATGTTACTCACTCCCTCCTAGACATACACATAAGGAACACAGGCTCTGCAAACGCTGTTCTCCTTGACCACTCTCACTAACACGGCAGTGGAATTTCACTAGTATTTGTACATTATCTACACGGACACATAGCtggtaacaacaacaacatacattAAACTAACATTAGACAAACTATGCTAACATTGTCAGACTTAGACTGAAGTCAGTCGTCTCTGCTGCCTTCGGATATCCTTGTACATCTCCTTTCGAACGCGGAACCCAAGATAATGGGAGGGTCGTCATAAAGAACAAAATAACAGATAAGACCATATGAAAGATTCAAATTGTCTCATACCTCGGAGTAGATTGCATATGGCAGCAACCTGGAGGCTGATATTTCCCTTTTGTTCGAATGGTCTTTCTTAACGTCAATAAATATGTAATACAGGGTTGTTCAACTGAACACAGTGCCACACAAAACTCTAAAAAAATCATTCCTGTTCTCTTGCAAAGGAAATATATTCATTTGAGACCCACATTGAATGAACCTGAAATGCCCCCTCTTCACAAACAGTTACAGCATTGGCCGAATATGTCCATCACAACAAAGCCTGACCTCAGCCTCCAAAACAAAACACCTCCAAAATGGCTTTCCAACACATAAATATAGCACTCTATATTAAATGGTGCTTTTTTGCCGTAcgaaaaaatgtaattaaaaacaaCTAAAATATACATACAAAACGTGTAGATATGAATGCGTTGAAAATAACAGAATTTTTCGGAACAAGGACAAAAACATTCCTGACATCACCGTATGATTCTTCTAACCATCAAAAAACGAATGATTTGTAGTACACTGGTACTCCATCATCTTGGCCTACGCTGCAAATGTAACTAGAAATCGGCACTCATTTACACATCATTTAGAAAACAGGAAATCTGCTCTTCAATTTCCCTCAAACCGTACAACAATATATTTTGGGCTAAGCCAATTTGATAGCGTGTACTTTCGTACAGTACTTCTGTAATGTTTCAAACACACCCAAACATTTCGTCTGGCCTTTCATTTGAATTTCCAATCTGAAACACAACGCTCAATATGTGGATCATATAAAGGTACAGTGTAAAGATTACTGATAGCTTCATTTTCATTCTCAGCATACTGTAGTATACTAACATAACAGCTCTTTAATTCCCTAACACATTTTTCCCAAAGTGTCTCACCAAACCTTTGAAGGTATATCACAAAGTATAGCTCTCCTACTCACATTCACTTATGTACTGTACCTGCTTTTGTACCCTGGTCTCAAACAGACGTACACAGAAACTAATAAATAACTCGAAACCTGGGTCATGTTtgaatgaaagaaatacaagGGAAGATGTTCCAGCTAAAACAACCAGGGGTATTATTAGATGGGCTTCAGACAAGCTTTTGAAATTGTCTGACCTGCAATGACATAATAGCCGTATGTTTATAAACATGAACACAGTGTCAAAGGTTATATGGGAGGTTGCCTTATGTTGTCACGGGGATGGCACAACAACAGTGTGGTCACCTGGGTGGTGTTCATTTGGCCACACAACAGAAGGCGTTTTAAAACGTTTTGTAACGTGAAAAGAAAATGAACGCTTATTATTGGACAAGGGAGTCTCGCCCGGTTTGTCCGTTTTCTTCCGCTTGTTGACTAATGAACACGCCCCAGGTGTTAATGCCACAGGGTGGGCTCTTTAAGACATACAGTGCATAAGCAATGATCATATGTGTTGTTCAAACATTTCTCCACAGTATATCATGTCTCAAAGGTTCATTGCGTTATAAGACGGCCTTTGAGATTTTAAATTAGCTGTGGAATGCTTCATAATTTTGTTCAACCAAATAATAGTGGAATCATGATATCATATATACACCATAATGATACAAATCATAAAGAGAAAAAAAACCACACCATAATTAAAACCCTTCTGCAGACATTCattcacacacacacacacacacacacacacacacacacaggagtgtgGGGCTGGGCCGTTGGGGATTGTCACTAGAGCTTGGTGAGTCTTCGGGCAGGGATAACGGGGTTTGGGGGGGGGTGTACAGTATATGGGTGTTAGGCTAGGCTGGGTTAGGCTGAGCTGAGCAGGGCTGGGATGAACTGGGATGGGCTAGGGCTCCTCGAAGAGCTGCAGGTCCAGTCGTACGACAATCTCTCCTGTGGGCACCTCGTGGAGCAGCAGCCTCTTGGTGATGGGCCCTTTGGAGCCCTGGTCCTTCTTAATGTCCGCCAGACGGATCTCTGTCCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671657 lncRNA downstream 12001 24782301 ~ 24788109 (-) True G588965
TU671597 lncRNA downstream 28961 24698930 ~ 24771149 (-) True G588909
TU671633 lncRNA downstream 39588 24759222 ~ 24760522 (-) True G588944
TU671593 lncRNA downstream 105456 24694379 ~ 24694654 (-) True G588905
TU671582 lncRNA downstream 118362 24681528 ~ 24681748 (-) True G588894
TU671684 lncRNA upstream 11836 24814698 ~ 24816030 (-) True G588979
TU671687 lncRNA upstream 19442 24822304 ~ 24822560 (-) True G588982
TU671688 lncRNA upstream 19930 24822792 ~ 24823045 (-) True G588983
TU671695 lncRNA upstream 32265 24835127 ~ 24835417 (-) True G588990
TU671721 lncRNA upstream 64845 24867707 ~ 24869002 (-) True G589016
XM_021608914.2 mRNA downstream 62114 24732997 ~ 24737996 (-) False cryzl1
XM_021608916.2 mRNA downstream 62114 24732997 ~ 24737996 (-) True cryzl1
XM_021608917.2 mRNA downstream 76487 24721469 ~ 24723623 (-) True cbr1
XM_021608919.2 mRNA downstream 88950 24709221 ~ 24711160 (-) True LOC110527556
XM_036983035.1 mRNA downstream 108503 24585451 ~ 24691607 (-) True LOC110527549
XM_036983042.1 mRNA upstream 18333 24821195 ~ 24823487 (-) True LOC110528817
XM_036983048.1 mRNA upstream 113115 24915977 ~ 24965331 (-) False LOC110527560
XM_021608930.2 mRNA upstream 318406 25121268 ~ 25164357 (-) False LOC110527562
XM_036983057.1 mRNA upstream 412357 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 412357 25215219 ~ 25246690 (-) False LOC110527565
TU669777 other downstream 1422409 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1634901 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1712973 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 1987607 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 2179994 22610161 ~ 22620116 (-) True LOC110527522
TU671692 other upstream 25626 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 168751 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 398544 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 445818 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 741873 25544735 ~ 25545418 (-) True G589705

Expression Profile