RNA id: TU671721


Basic Information

Item Value
RNA id TU671721
length 1270
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G589016
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24867707 ~ 24869002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacatacatgtacatactctcacatacacacacacatgtacagtaacGCACAATTGGAACATAGATTAAACAGTTCACTGATTTCATGAAAAGCTGAGGAGTAAGTACATGTCAGTCAGAGCAGAACTAACCACTGATTGGTCCTGCACACGGACACTCCCCCGCCTGAGGAGAAATGGTTGTAACATAGCATCACCAGAAAGATCAAATCAGCTTTCTCCACATTGTTCATTCTTCAGAACAGAGCGTAAAATATGGAGAATTCCCCACAAAGCAGGGGAAGACAGAAAACTTACAGCAAGTTGGCTAAATAACAGGAATCATATTAACTTTATTGCAATTTCATGTCTGTTTCAGGAAACAGCCAGTTTGGCACTCTCTAACATAATTTGATTTCACAAGTTTGGTACAGACAGAGAAACCATATCAATATTATATCTGCCCAAGATATGTAAATATACAAACACATAAAAAAGTATATGAATGTTTTGCTTAATTTGTATGTATAAAATGAACAGTGTAGATTATCCTTGCTAGTCCTTGCAACCAATTAAGAACAAAATAAAAGACATACGCATGGTAATTCCAATAACATTGAAATTTGAACACACACGGATCATACATCAACAAATGTTGAAATGATAGATCTCCAGCATTTCACACATTGTAAATAACAAACAACACACAAAAACGTACAACCACAAAGTTAGTGACGTGCTTACAATGATCATACGCTGATCATGATCTAAGCACCGAACATGGACAATTGATTTAAGAATCAACATACCCAAAACCATTGTCCTGTTGTGACATATGAGGTAAAACGTTTATAAACCACCACTCCTCCACTCAAATAAGTGCCTCAGAGTCTATCCTATCCCTGATCAGTATTCTGCCCTCAGCTGTGCATATATTTCACAAGGCTTGATTGATTGACAGATTGTTGATTGGTTGATTTTTGTAGGCCAGATATAACCTCGGCCTAGGCTTTAGCTAGCCTGAGCCACCACATTGCCACCGTAGTTAGCTAGTGCTGCAACTCCAATAGGCCTAAGCCCTGTGATGCCTGGCCTTGGAATAGTCTAGGCCTGGGCTGGCCTGTGCTGTGAAGATGTGTGTGCAGGACAAACCAAGAGGTTAGGCAAGCTcaaagagggagtgggagagataaagagagaccgagagagaccagGTTGTCGAAAAGAGGTGTCTGAGTGCAGTAGCCCCCACCCCGGCCCACTCAGGTCTTCCCCTCCTCTGCTCACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671695 lncRNA downstream 32290 24835127 ~ 24835417 (-) True G588990
TU671688 lncRNA downstream 44662 24822792 ~ 24823045 (-) True G588983
TU671687 lncRNA downstream 45147 24822304 ~ 24822560 (-) True G588982
TU671684 lncRNA downstream 51677 24814698 ~ 24816030 (-) True G588979
TU671678 lncRNA downstream 64845 24800110 ~ 24802862 (-) False G588974
TU671724 lncRNA upstream 3345 24872347 ~ 24872644 (-) False G589019
TU671725 lncRNA upstream 3425 24872427 ~ 24872644 (-) True G589019
TU671729 lncRNA upstream 6364 24875366 ~ 24875823 (-) True G589021
TU671730 lncRNA upstream 6941 24875943 ~ 24876161 (-) True G589022
TU671733 lncRNA upstream 11636 24880638 ~ 24881011 (-) True G589025
XM_036983042.1 mRNA downstream 44220 24821195 ~ 24823487 (-) True LOC110528817
XM_021608914.2 mRNA downstream 129711 24732997 ~ 24737996 (-) False cryzl1
XM_021608916.2 mRNA downstream 129711 24732997 ~ 24737996 (-) True cryzl1
XM_021608917.2 mRNA downstream 144084 24721469 ~ 24723623 (-) True cbr1
XM_021608919.2 mRNA downstream 156547 24709221 ~ 24711160 (-) True LOC110527556
XM_036983048.1 mRNA upstream 46975 24915977 ~ 24965331 (-) False LOC110527560
XM_021608930.2 mRNA upstream 252266 25121268 ~ 25164357 (-) False LOC110527562
XM_036983057.1 mRNA upstream 346217 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 346217 25215219 ~ 25246690 (-) False LOC110527565
XM_036983050.1 mRNA upstream 346217 25215219 ~ 25288632 (-) False LOC110527565
TU671692 other downstream 39007 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1490006 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1702498 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1780570 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 2055204 22808653 ~ 22812503 (-) True LOC110527529
TU671806 other upstream 102611 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 332404 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 379678 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 675733 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 1288991 26157993 ~ 26158305 (-) True G590443

Expression Profile