RNA id: TU671729



Basic Information


Item Value
RNA id TU671729
length 420
lncRNA type intronic
GC content 0.38
exon number 2
gene id G589021
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24875366 ~ 24875823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcccagttagacagcaaatgttccttttgttccataaagattatttttatacccaaaatacctccgtttgctGGTCACGTTATGTTGAAAAATCCACCTGAAATAGCGGTCATGACAACgctgaaaaaaaatctaaattatatccacaatatcgacagaaacatggcaaatgttttttataatatatcaaccgggacaattggcttttcagtaggagcgagaggaaaaatgactacctctgtcttttacgcaagaatcactcagagccctcagctggccacttacgcaatatTGTCGTTTACACTCATTCTTCAACAttaaggcgtgaaactacgtcaaaatgctgtagacaccttagggaatacgtaaaaataggaatctggttgatatccctttcaatggtcaataggggtacatagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU671724 lncRNA downstream 2722 24872347 ~ 24872644 (-) False G589019
TU671725 lncRNA downstream 2722 24872427 ~ 24872644 (-) True G589019
TU671721 lncRNA downstream 6364 24867707 ~ 24869002 (-) True G589016
TU671695 lncRNA downstream 39949 24835127 ~ 24835417 (-) True G588990
TU671688 lncRNA downstream 52321 24822792 ~ 24823045 (-) True G588983
TU671730 lncRNA upstream 120 24875943 ~ 24876161 (-) True G589022
TU671733 lncRNA upstream 4815 24880638 ~ 24881011 (-) True G589025
TU671737 lncRNA upstream 9625 24885448 ~ 24893380 (-) True G589029
TU671746 lncRNA upstream 27586 24903409 ~ 24903860 (-) True G589038
TU671747 lncRNA upstream 28089 24903912 ~ 24904166 (-) True G589039
XM_036983042.1 mRNA downstream 51879 24821195 ~ 24823487 (-) True LOC110528817
XM_021608914.2 mRNA downstream 137370 24732997 ~ 24737996 (-) False cryzl1
XM_021608916.2 mRNA downstream 137370 24732997 ~ 24737996 (-) True cryzl1
XM_021608917.2 mRNA downstream 151743 24721469 ~ 24723623 (-) True cbr1
XM_021608919.2 mRNA downstream 164206 24709221 ~ 24711160 (-) True LOC110527556
XM_036983048.1 mRNA upstream 40154 24915977 ~ 24965331 (-) False LOC110527560
XM_021608930.2 mRNA upstream 245445 25121268 ~ 25164357 (-) False LOC110527562
XM_036983057.1 mRNA upstream 339396 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 339396 25215219 ~ 25246690 (-) False LOC110527565
XM_036983050.1 mRNA upstream 339396 25215219 ~ 25288632 (-) False LOC110527565
TU671692 other downstream 46666 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1497665 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1710157 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1788229 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 2062863 22808653 ~ 22812503 (-) True LOC110527529
TU671806 other upstream 95790 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 325583 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 372857 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 668912 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 1282170 26157993 ~ 26158305 (-) True G590443

Expression Profile