RNA id: TU671748


Basic Information

Item Value
RNA id TU671748
length 1267
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G589040
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24904316 ~ 24905582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTAATTTGCCTTTTAATCATTTGATTTACTTAGAGACCCTTGTCAAACATTACCCTCTGAAAACTAGAGGTAGGCAACAGTTTTTAGTGTTGTTAACACCATGCTCTCGTACTCTGAGCTAATCAGAACACACTGTTTAGACATTGCCCCAGGCTGTCAGAATTGGAAGAAGTGGTGAGAGGCCTTCGGAAGCAGCGTTGGCATGGAACCCATCTGCCATCTGGTGCCCGTGCCGAGCAAGTCCAACCTGGCACCAAACCTCTGTCGCCTGGTTCCCGGCTTATCCACGTAACACATGGAGCCCCTTTCCACCAACCACTCTGGCATGATGAACGGACCCAGAGGCAAATACAATTGCCCACCACCCAGAGTACCCATGTGGCTTCCCATGCCCAAGCCAGAGCCCAACTCCACCCTGGGCTTCTGTCTAGCCTCCTGTGGCTGATCATGGACCAGCAGCTCCATCGGTTGGATAGGTTGGTTCTTTTGACTCTGCTGAAGAaccaagcagcagcagcagacgaAGCAGCAATAGCAGTaggagcagcagcaacagcagatgAAGCAGCAGTATCAGCAGCACCTGTGTGCTGCTAACAGCTCTGCTTCCTCCACTGTCCAACTGCCCCATACTGGGCTCATCAATACCTGCCTAACTAGCAAAAAGAGGATCTAGTCTGATCTAATCTGGACCAGTGGGGTATTAATGCAAATTGTTAACCCCATGTTTCAGCCATCTATATATAGCCACTATGCTTCATCAGTTTTATACACTGTAGGTGATCAGTCGTATTACTTAAATAACACCTATCTGATAATATGGGTCACGTAGGCCTACTTTTTAATAAATGTTATTGGGCTAATTTCAGGGGGTGGGAGAGGCATAGCATTTTAGAATGCCAATAACTGGCCATGCATTAAGTACTATGATTATTTTTCTTAAAAAATGCTGGAAAATCCAATTATGGATATGACAAATCCACTCCGCAAATGGCCTGTGGGCCACTTCACCTGCTCTTGGTAAAAGCATAAATCTATTCTGCTGGCATCCGAGTTGGATGGCAGGGACAGCCGGTGTAAGTGATGTCATCCTCAGACGAGTCCTCAGCTCTTGGTCACTGGACGAATCCTATACTAGCTTTGTGTCACCTTATATTGGGCCTAAAGGCATTCAAACTGTGGTTATGGAGTTTATATTGCATACACTAAGGGGTCAAATACaatgccttgtgaaagtattcggcccccttgaactttgcgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671747 lncRNA downstream 150 24903912 ~ 24904166 (-) True G589039
TU671746 lncRNA downstream 456 24903409 ~ 24903860 (-) True G589038
TU671737 lncRNA downstream 10936 24885448 ~ 24893380 (-) True G589029
TU671733 lncRNA downstream 23305 24880638 ~ 24881011 (-) True G589025
TU671730 lncRNA downstream 28155 24875943 ~ 24876161 (-) True G589022
TU671749 lncRNA upstream 1303 24906885 ~ 24907282 (-) True G589041
TU671750 lncRNA upstream 1723 24907305 ~ 24907696 (-) True G589042
TU671751 lncRNA upstream 2458 24908040 ~ 24908445 (-) True G589043
TU671752 lncRNA upstream 3227 24908809 ~ 24909078 (-) True G589044
TU671764 lncRNA upstream 32053 24937635 ~ 24937843 (-) True G589056
XM_036983042.1 mRNA downstream 80829 24821195 ~ 24823487 (-) True LOC110528817
XM_021608914.2 mRNA downstream 166320 24732997 ~ 24737996 (-) False cryzl1
XM_021608916.2 mRNA downstream 166320 24732997 ~ 24737996 (-) True cryzl1
XM_021608917.2 mRNA downstream 180693 24721469 ~ 24723623 (-) True cbr1
XM_021608919.2 mRNA downstream 193156 24709221 ~ 24711160 (-) True LOC110527556
XM_036983048.1 mRNA upstream 10395 24915977 ~ 24965331 (-) False LOC110527560
XM_021608930.2 mRNA upstream 215686 25121268 ~ 25164357 (-) False LOC110527562
XM_036983057.1 mRNA upstream 309637 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 309637 25215219 ~ 25246690 (-) False LOC110527565
XM_036983050.1 mRNA upstream 309637 25215219 ~ 25288632 (-) False LOC110527565
TU671692 other downstream 75616 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1526615 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1739107 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1817179 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 2091813 22808653 ~ 22812503 (-) True LOC110527529
TU671806 other upstream 66031 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 295824 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 343098 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 639153 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 1252411 26157993 ~ 26158305 (-) True G590443

Expression Profile