RNA id: TU672309


Basic Information

Item Value
RNA id TU672309
length 540
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G589530
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25188735 ~ 25192468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccaacagacgggttggGACAATATCAGTATAAGAAtactgtttacatacatcttgtcagttctctgttctgccctgcgtggtattacagtgagcccgtacatacgaaagttgcatttgccatttattacttagctaataaaaaatacatagtataaaattggtgactcattgttatatttatcctgataccagattcgaatttacGCAACTCTAACATGGTGACCCCGACGTGATCTGGTAAATGACATCGCTGGACATTGGTGTGCCAGCCGATTGGCCAGTACTGTCGTCGGACGGTGTGTCTCACAAATCCTGACCGGTCAACTAAAAAAGGTGCTGCCAAAACCACAGAGGTCCCAGACGAACCAGAGCCAGACACACTCCTCTACCACCCCTGGAACGAGCCTAGCACCCACCACCACTATTTCAAATCCCATTCAGGTAATTAACGTTAGAGACTATTCAGCTATTGATCAATTAGGCACTGAGACTGGTTTTGATGGTAGGGACAATTTGTGGCTGTCTTATATGAGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672322 lncRNA downstream 15107 25173388 ~ 25173628 (-) True G589543
TU672202 lncRNA downstream 24408 25121273 ~ 25164327 (-) True LOC110527562
TU672259 lncRNA downstream 90835 25096410 ~ 25097900 (-) True G589499
TU672248 lncRNA downstream 108859 25079050 ~ 25079876 (-) True G589488
TU671769 lncRNA downstream 237475 24947290 ~ 24951260 (-) True LOC110527560
TU672335 lncRNA upstream 5459 25197927 ~ 25198249 (-) True G589556
TU672337 lncRNA upstream 6674 25199142 ~ 25200889 (-) True G589558
TU672287 lncRNA upstream 10651 25203119 ~ 25214524 (-) False G589525
TU672288 lncRNA upstream 10651 25203119 ~ 25214524 (-) False G589525
TU672289 lncRNA upstream 10651 25203119 ~ 25214524 (-) False G589525
XM_021608930.2 mRNA downstream 24378 25121268 ~ 25164357 (-) False LOC110527562
XM_036983048.1 mRNA downstream 223404 24915977 ~ 24965331 (-) False LOC110527560
XM_036983042.1 mRNA downstream 365248 24821195 ~ 24823487 (-) True LOC110528817
XM_021608914.2 mRNA downstream 450739 24732997 ~ 24737996 (-) False cryzl1
XM_036983057.1 mRNA upstream 22751 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 22751 25215219 ~ 25246690 (-) False LOC110527565
XM_036983050.1 mRNA upstream 22751 25215219 ~ 25288632 (-) False LOC110527565
XM_036983053.1 mRNA upstream 22751 25215219 ~ 25290843 (-) False LOC110527565
XM_036983054.1 mRNA upstream 22751 25215219 ~ 25290843 (-) False LOC110527565
TU671806 other downstream 209628 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 360035 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1811034 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 2023526 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 2101598 23084490 ~ 23087137 (-) True G586878
TU672308 other upstream 8938 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 56212 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 352267 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 965525 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1385701 26578169 ~ 26585507 (-) True LOC110527590

Expression Profile