RNA id: TU672290


Basic Information

Item Value
RNA id TU672290
length 3118
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G589525
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25203119 ~ 25214524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGATCATCGGTCACTTCAAGGAAAGAAGGTCCCATTTTTTTTAGGCTTAGTGTCCTGTTGTATTCTAGAAGAGCTCATTTGTAACCTGTCACTGGTATGATAAGCATAGATATACTGTGCAAAACATTtaggaacacttgctctttctgagactgaccaggtgaaagctataatcctttattgatgtcaattgttaaatccacgtagatgaaggggagatgggttaaagaaggatgtttaagccgagagacaattgagacatggattgtgtgccattctgagggtgaaagggcaagacaaaagatttgtgCCTTCAAACAGGCTACGGTAGTAGGTGCTCGGCACACCGGTTGgagtgtcaagaactacaactctgctgggtttttcacacttaagtttcctgtgtgtatcaagaatggtccactacccaaaggacatccagccaacttgacacaacggtgggaagcattggtgtcaacatggaccagcatccctgtggaacgctttccacaccttgtagagtccatgccctgacaaattgaggctgttctgagggcaaaaggaggttcaactcaatattaggaaggtgttcctaatgtcttGTACAAAGTCTCTTTATACACAGGTCACCCAATAGTTATTTTTTTTCCACTAGTTGGTCTTTTGACTATCAAATCAGCTCTCTGGCCaataattgggctgcctgtataAACGTAATCTGATAAAATGGAATGTTGCTCTGGGTTCAGTGTTGATGGGCTTTGAATGCCCTCTTGTGGTCTCCACATGTCTTGCATACACAGGATCACCCTGTATGCGTCTTTCAATCACGATGGATAGTGGATCATTAATAGACATTATCACTTGTATGTCCCACTTACAAAACATGAAAATGAATGATGACACATTCAGACAAGAGTAATCAATTTAATTGGAAATTATCTCTTAGGTTCCAGCGCCACTATCAGAACCTCCCTGTTTTCCAACGAGTACTGTCAGGGCCTGATAAGGAGAATGTcacattcagatagaaatgtatggTGTATAACAGATATGGTTGTCATTCAGAATTGTACTGTATAGAGCTGACAATTCCCTATTTTATCTGCAACACTCGTAACTTTTCACATCATTGAAGTCACTCCAGGTGGTTGCCGATGCTGTCGCCCCTTGGGATCGGTTGAGGCTCCACTTGTCTGGAGAAAGAGTGGCTGGGAAAGAGAGTGGCCTCAGAGAAGCCAGGCAGGACAGGGCCTGCAGCAATACATTATTTTGGTTAGCACAGTGATTATTTTGTGTGTTCTATACATTGGTGTCAACTGAAGCAGTTTTGCTTGAGCCTGGTCCCTAGAGCTGTTTGTGCCATCTTGCCAACGGACCAAAGGAGATAAAAAAGACAGATCTGGGAATAGGCTAGGTTTGCTTACCCCTGTTCCCAGATGGTTGCACGTTCAACTGCTGCCTCTTCCTCGTGAAGTctcttcaCTACTGGACTCGGAGCTGGAGCTGTCCTGGCCACAGTTCAGGGACACAACCTGAGTGAGCTCTGCAGTGACACGAACACGTGCGGTGCAGGAGGCGGCCggctgggagagagggaacaagggaggaaaggaggattaGTGGCAGTTAAGAGAGAAGAAAATGGGCATACAATTACGCACGTTGATCAGTATGCTAGTACAGTATGAATGCAGTATGAATCTAAGAATCTATATCTTTAGCGGTTTATAACAGGCACCAGTCCTGTTGGAATGatcagggcagagagagagaagctcatTTGGTGACATTCTGTTCTCCCCTGTCTGTCACAGCAAACACAGCATCCCATGCCAAAATCAACAGTGTGTGGAGTCTGTCAACAGAGAATGTCCTGAAAAAAAACAGCAGTTTTATAGATGAACCCCACAAACCCTTTAGTGGACTATCACAGTAATCTATGCCCAGGACCAAACACAAACCATTTGCTCATATTGTCACCCGGTATTGATGTAAAATACAGCTACTGCAGTTTatgtaggtagagatgtggtcATTATATTTATCAGTCCCAATCCTTCGTCAGCTGCGAATTGGGGAGGAATTATTTATTGTACTGCGTCAGTGTATTTCAGTCTCAAAGGAGTGTATAGAGtagagtactgatctaggatcagggccTCCCTGTCCATAGTGTATTTTTattaattatgatctaaaagggaaAACCGATCCTAGATCATCACCCTTACTCAGAGGTGCTTGATACATACAGCCCCTGATCTATTTCTTGCACTGATTTCATAGGCTGCAATGACACAAGGCAGCCCAATTCGGATATTtctttcactaattggtcttttgacaaaTCAGATCTTTTCTTTGGCCAATAATCGAGGATCGGGTCTCACCACAAAGAAGCCCACTCTGAAAGCACATCTCTGTGGGTCTTCTCCAGAGCTCTTCAGACAGTCCGTCTCCTTGATCCCAAAGTTCATCATCAGGTCATAAGTGTTCAATCCCAAAGGAACAACCTTTTGATAGAGCCACGGGTGACTCGGTATAGACGAAGGCCAGCGTACAGATTGTTGACTTGGGTCATGGTCACGACGAGAGCCTTGTCTGCCGTGGACGCCAACTCTGACTGGTACAAGGGCAAGCCTGCAGAGGTCAAACGGTAAAAGAGGAGACTGAGCACTCATACAGTACATTTCACATCCGTGGTATTTGGGAGGTAATATTGTCCTGGGTCCCTCGTCTGCATTGTGAATTCatgatttgttttttaaaaatgtgtattaTTAAAGATTAACATAATACCTTTgaactgggtcatgttcattagggctcACAGTAACAAAACGTgttgcaacagaaaacaaaaataaacatgtcTTATTCCTCCCCATTTTACTTGTTTTCTTCAGTTTGGTGCCCAATAAACACGACCCTGGCTTCACTTCCTGACTGGACGCAAATGACAAAATCAAATGGACTGAGACGTGTAGAAGCACTATCAGAACCAGCTGCAAAATTGAGTTCTACACCTGAAAGGATTGTATATCACTTACCTGAGCAGCACAAAGACTGCAGCAAGGCCAGCATGAGAACACACCACTTCATCTTCTGTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672337 lncRNA downstream 2230 25199142 ~ 25200889 (-) True G589558
TU672335 lncRNA downstream 4870 25197927 ~ 25198249 (-) True G589556
TU672309 lncRNA downstream 10651 25188735 ~ 25192468 (-) True G589530
TU672322 lncRNA downstream 29491 25173388 ~ 25173628 (-) True G589543
TU672202 lncRNA downstream 38792 25121273 ~ 25164327 (-) True LOC110527562
TU672370 lncRNA upstream 86930 25301454 ~ 25315300 (-) True G589590
TU672355 lncRNA upstream 110761 25325285 ~ 25326280 (-) True G589575
TU672417 lncRNA upstream 192187 25406711 ~ 25407033 (-) True G589631
TU672425 lncRNA upstream 199482 25414006 ~ 25414225 (-) True G589639
TU672434 lncRNA upstream 210338 25424862 ~ 25425294 (-) True G589648
XM_021608930.2 mRNA downstream 38762 25121268 ~ 25164357 (-) False LOC110527562
XM_036983048.1 mRNA downstream 237788 24915977 ~ 24965331 (-) False LOC110527560
XM_036983042.1 mRNA downstream 379632 24821195 ~ 24823487 (-) True LOC110528817
XM_021608914.2 mRNA downstream 465123 24732997 ~ 24737996 (-) False cryzl1
XM_036983057.1 mRNA upstream 695 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 695 25215219 ~ 25246690 (-) False LOC110527565
XM_036983050.1 mRNA upstream 695 25215219 ~ 25288632 (-) False LOC110527565
XM_036983053.1 mRNA upstream 695 25215219 ~ 25290843 (-) False LOC110527565
XM_036983054.1 mRNA upstream 695 25215219 ~ 25290843 (-) False LOC110527565
TU671806 other downstream 224012 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 374419 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1825418 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 2037910 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 2115982 23084490 ~ 23087137 (-) True G586878
TU672303 other upstream 34156 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 330211 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 943469 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1363645 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1951651 27166175 ~ 27166468 (-) True G591808

Expression Profile