RNA id: TU672355


Basic Information

Item Value
RNA id TU672355
length 996
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G589575
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25325285 ~ 25326280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaccagcaaagcaccatcacacccccacctccattcttcacggtgggaaccatatatgtagagatcatccgttcacctactctgagtcacaaagacacggcggttgcaaccaaaaatctaaaatttggactcatcagaccaaaggacagatttccaccagtccatTGCTTGAGTTTCTTGgtccaagtctcttcttattggtgtcttttagtagtggtttctttgcagcaattcaaccacaaaggcctgattaacTATTCCAAGGAGACAGCGtgaatgttgagatgtgtctgttacttgaactctctgaagcatttatttgggctgcaatctgataATCTGATAatctgttaactctaatgaacatatcctctgcagcataggtaactctgggtcttcctttcctgtggcggtcctcatgagagccagtttcatcatggcacttgatggtttttgcaactataCTTGAAGGAACTTTCAATGTGCTTGacatgttctggattgactgaccttcatgtcttcaagtaatgatggactgtcatttctctttgcttatttgagctcttcttgctgtaatatggacttggtcttctaccaaatagggctatcttctgtatactacccttaccttgtcacaacatatctgattggctcaaatgcattaagaaggaaagaaattccacaaattaacttttaacaaggcacacctgttaattgaaatgcattccaggtgactctcATACAGAttgttgaaagaatgccaagagtgtgcacagctgtcatcaaggcaaagggtggctactttgaagaatctaaaatgatttgtttaacactttgtttggttagtacatgattctacatgtgttatttcatagttttgatgtattcactattattgcacaatgtcaaaaatatagaaaaacctttgaatgagaatatgtgcccaaacctttgactggtgctGTGCATATGTACATAgtgtgtattcagacccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672370 lncRNA downstream 9985 25301454 ~ 25315300 (-) True G589590
TU672288 lncRNA downstream 110761 25203119 ~ 25214524 (-) False G589525
TU672417 lncRNA upstream 80431 25406711 ~ 25407033 (-) True G589631
TU672425 lncRNA upstream 87726 25414006 ~ 25414225 (-) True G589639
TU672434 lncRNA upstream 98582 25424862 ~ 25425294 (-) True G589648
TU672438 lncRNA upstream 102466 25428746 ~ 25428977 (-) True G589652
TU672392 lncRNA upstream 106101 25432381 ~ 25459552 (-) False nrp2a
XM_036983049.1 mRNA downstream 34441 25215219 ~ 25290844 (-) False LOC110527565
XM_036983051.1 mRNA downstream 34441 25215219 ~ 25290844 (-) False LOC110527565
XM_036983053.1 mRNA downstream 34442 25215219 ~ 25290843 (-) False LOC110527565
XM_021608935.2 mRNA upstream 855 25327135 ~ 25337360 (-) True fastkd2
XM_021608936.2 mRNA upstream 20116 25346396 ~ 25358486 (-) False retreg2
XR_002474141.2 mRNA upstream 20116 25346396 ~ 25358486 (-) True retreg2
XM_036983058.1 mRNA upstream 32627 25358907 ~ 25361238 (-) False LOC110528818
XM_036983060.1 mRNA upstream 32627 25358907 ~ 25361247 (-) False LOC110528818
TU672303 other downstream 34680 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 46411 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 346178 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 496585 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1947584 23375012 ~ 23377701 (-) True G587242
TU672491 other upstream 218455 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 831713 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1251889 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1839895 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 2156677 27482957 ~ 27483780 (-) True G592298

Expression Profile