RNA id: TU674218


Basic Information

Item Value
RNA id TU674218
length 1692
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G591322
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26541989 ~ 26543680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagataattttttttattttattttaagtcTAAACATAAAAAGTACATTTTACtgacactgaggggcagtgtttttacagctaatgccggtttgcctgaggctgaggCCGTGcactcattcaaataaacacacacaagaacacacatgtaatagtgccagacatgcacacaaacatatagttagcattgctgttatgattttagttgtccttgatgtcctttgtttaaaatgtttatgtttgTTTTGCTGTTTTCTCCTGTCTTTTCCTTTTTCCTCTAGTCCATGATGGTTGATGCATTGGGGCTGGTTCTTGGGGGAATGGAATtcattttatttttcttcttggggggGTCTTGAATGGTtcagggacagctattggggaactgtggagggatcttggagggttcgggttaaagttttttggcctggtggtagatctgtcaatgtgcccttgagcagggcattgaccctggatgcttctgtgtgtcgctctgaatgggaatctgttggatgactggtatgaaatgatttgtcaagatcggtgtggaagaacttgactggcttgcacagagccctgacctcaacgccATCGAACACcttagggatgaattggaacacccgACTGCGGttcaggcctaattgcccaacatcagtgcccgacctcactaatgcttgtggctaaATGAgactgcagcaatgttccaacatctagtggaaatccttcccagaagagtggaggctgttatagcagcaaagggggggaccatctccatattaatgcctatgattttggaatgagatgttcaacgagcacgTGGAGTAGGATTCTGCGTTTTGCTTTATACaccttcccaatgaaaactagtttgaAAAATCATTACACGCAACCCGCAAGGTCCCCAGTTCAACTCCTGGTTGCGACCTTTTTGTTTTCCAACCTTCCAAACGAATTACATCTAATCACGTTCTAATTGACTGAGCAGCTTTAATAATGTGCAGCATTGACATTGCCATCCCCCCTGTTGGCACTGTGGACTATTCCCTATCCCAGTGCCTAGGCCACGTTTGAATGTTGTTGGTGCCCTTTATCAAAATAAAGGTAACCTTCAATGTTACTGTCAACTAAAGGCAATTACTCCAACGTTCGTAGAGATCACATTCACCATAAACCCTGCCAATTTCAACTCTGCTCAAACATGAAGTATGTTCATAACATTTGAACATCATGTTACACTATGAGTAATGCAGGGGATATTTAACTACATAAACAAATGTCATACCTTGATAAACAGTTGTTCACATCTATTTTAAACAACTTTTTACTTACAACTTTCATATCCACAAAACTGCAGTTGGAGTGGCCTAAGGTGGCGGAGCAGTCTTAACCAGAGACTGAAGAGGAAGCAAGACACCCCactttttttaaaaattgaaGTGAAACTAAGCAGACCAGATCCAGATGCTACTGCATTGTCTATGGGAGTTAAGTGGACGGGAACACTTTTCTCCGAATGGTAAGCAGCCTGAGTGAACAATCTTTGGTCTAAACTGCTGCCTCCGTTGCAGCATGTGTTCGAATCCATTGCTATTTCAGCAGAACTCATTcacccatctcccctccatccaAAAAAGCAGAAAATACCAAATTATACCTTTAAAACTGCAGTTGGCATCCCAGGTAGGATTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU674207 lncRNA downstream 9245 26532434 ~ 26532744 (-) True G591314
TU674198 lncRNA downstream 22463 26519309 ~ 26519526 (-) True G591305
TU674197 lncRNA downstream 23233 26518463 ~ 26518756 (-) True G591304
TU673740 lncRNA downstream 70217 26471571 ~ 26471772 (-) True G590865
TU673572 lncRNA downstream 191393 26350127 ~ 26350596 (-) True G590701
TU674221 lncRNA upstream 315 26543995 ~ 26544256 (-) True G591323
TU674184 lncRNA upstream 19111 26562791 ~ 26563311 (-) True G591291
TU674229 lncRNA upstream 31933 26575613 ~ 26576290 (-) False LOC110527590
TU674246 lncRNA upstream 53334 26597014 ~ 26597276 (-) True G591348
TU674247 lncRNA upstream 54153 26597833 ~ 26598097 (-) True G591349
XM_036983092.1 mRNA downstream 402040 26096153 ~ 26139949 (-) True LOC110527587
XM_036983088.1 mRNA downstream 402043 26096153 ~ 26139946 (-) False LOC110527587
XM_036983089.1 mRNA downstream 402045 26096153 ~ 26139944 (-) False LOC110527587
XM_036983091.1 mRNA downstream 402634 26096153 ~ 26139355 (-) False LOC110527587
XM_036983093.1 mRNA downstream 403602 26096153 ~ 26138387 (-) False LOC110527587
XM_021608972.2 mRNA upstream 3989 26547669 ~ 26571079 (-) True gart
XM_036983095.1 mRNA upstream 32292 26575972 ~ 26580793 (-) False LOC110527590
XM_036983096.1 mRNA upstream 32292 26575972 ~ 26585515 (-) False LOC110527590
XM_021608973.2 mRNA upstream 32292 26575972 ~ 26585525 (-) False LOC110527590
XM_036983097.1 mRNA upstream 185958 26729638 ~ 26865769 (-) False LOC110527591
TU673308 other downstream 383684 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 996571 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 1251384 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 1263115 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 1562882 24971613 ~ 24979107 (-) True G589093
TU674230 other upstream 34489 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 622495 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 939277 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2480727 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 2873175 29416855 ~ 29495130 (-) False G594762

Expression Profile