RNA id: TU674492


Basic Information

Item Value
RNA id TU674492
length 843
lncRNA type intronic
GC content 0.36
exon number 2
gene id G591583
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26968177 ~ 27007229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacgcacaccagagataacgtgcacaagcacttacaatagcgaacaaggacatgtggggaacagagggttaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattaccatgacgcaacgttaactattcatgaaaatcgcaaatgaaatgaaataaatatgctagctctcaagcttagccttttgttaacaacactgtcatctcagattttcaaaatatgcttctcaaccattgcaaaacaatcatttgtgtaacagtattgatggctaacgtagcatttagcattagcattcagctggcaacatttacacaaaaaaacagaaaagcattcaaataaaatcatttacctttgaagaacttcagatgttttcaatgaggagactctcagatagcaaatgttcagtttttcctgaaagattatttgtttaggacaaatcgctccgttttctgcgtcacgtttagctatgaaaaaacccctgtatccaggattgtgtaaatctatcagcaagctcattagcataacacaacgttaactatttatgaaaatcgcaaatgaaatgaaataaatatgccatctctcaagcttagccttttgtaaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaatcatttgtgtaaaagtagctagctagcgttagcatttagcgttagcatttagcgttagcattagcgttagcatccagcacgcaacattaacaaaaacataaaagccttcaaataaaataatttacctttgaagaacttctgatgttttcaatgaggatactctcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU674347 lncRNA downstream 197368 26765871 ~ 26770809 (-) True G591443
TU674317 lncRNA downstream 264429 26703514 ~ 26703748 (-) True G591414
TU674316 lncRNA downstream 267264 26700691 ~ 26700913 (-) True G591413
TU674306 lncRNA downstream 285572 26682281 ~ 26682605 (-) True G591403
TU674247 lncRNA downstream 370080 26597833 ~ 26598097 (-) True G591349
TU674631 lncRNA upstream 140008 27147237 ~ 27147476 (-) True G591715
TU674802 lncRNA upstream 256890 27264119 ~ 27264360 (-) True G591882
TU674937 lncRNA upstream 344919 27352148 ~ 27352368 (-) True G592016
TU674996 lncRNA upstream 381993 27389222 ~ 27389538 (-) True G592075
TU675022 lncRNA upstream 405722 27412951 ~ 27417830 (-) True G592101
XM_036983097.1 mRNA downstream 102408 26729638 ~ 26865769 (-) False LOC110527591
XM_036983099.1 mRNA downstream 102408 26729638 ~ 26865769 (-) False LOC110527591
XM_036983100.1 mRNA downstream 102408 26729638 ~ 26865769 (-) False LOC110527591
XM_021608973.2 mRNA downstream 382652 26575972 ~ 26585525 (-) False LOC110527590
XM_036983096.1 mRNA downstream 382662 26575972 ~ 26585515 (-) False LOC110527590
XM_021608979.2 mRNA upstream 614477 27621706 ~ 27691752 (-) True fam155a
XM_021608980.2 mRNA upstream 696224 27703453 ~ 27707840 (-) True LOC110527595
XM_036983101.1 mRNA upstream 736734 27743963 ~ 27765935 (-) False irs2a
XM_021608983.2 mRNA upstream 774708 27781937 ~ 27785215 (-) True LOC110527597
XM_021608981.2 mRNA upstream 778714 27785943 ~ 27795723 (-) False LOC110527596
TU674230 other downstream 382670 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 809872 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 1422759 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 1677572 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 1689303 25201406 ~ 25278874 (-) True G589529
TU674725 other upstream 158946 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 475728 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2017178 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 2409626 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 2560972 29568201 ~ 29593462 (-) True G594900

Expression Profile