RNA id: TU675049


Basic Information

Item Value
RNA id TU675049
length 1376
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G592127
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27446709 ~ 27448084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGCAAATTAATTGTCTTATGTTTGTGTCAACTGGAGCACATATTTGACATTCTcctttatttcatttatttatataAACATGGCGATGTCTACTCGCATGAGATGCTACAAAAACTTCCTCAACTATAGGTCATATCAGAGACGAAGCCAAGACCAGAACTCTTGAGACCAAACAGTTTCAGGTGaagtttagagttagggttaaggttagaaaacAAAAGAGCAACAGCAGGATTTGAACCAGCGGCCTTCTGTATGTTTTGCCACCATGTGTATGTTGCGCCCCCCTATTCTATGATGTACTATGTAGTCTCTTTTAAACAACCATAGTGGTTGGTGGTGACTACAGGGCCACATCAAGTAAGGGAAAGTAGTCAACAATTAGCTGCAGTAATTAGGGACAGCCAGGCGTAAGGTTGAGATGTAAATTGAATTCAAAACTTGTTTTCAGGGACTAGGCTAACAGGACTAAATGGATGTGTGTGTAATTATTAAAGTTGCTGGCTAGCGCAGTGGAAGGTGGAAGGAGTATGACGTCTAGCCTTAAtgaccatgtactcttataatctctaccggcatagccagaagaggactgatcacccctcagagccttgatcctctctagatttcttcatAGGTacctgcctttctaaggagtttcctagccaccgtgcttctacatctacattgcttgctctttggggttttaagctgggtttatGTAGAAAGCAggttgtgacatctgctgatgtaaaaagggcttcataaatacatttgattgatttgaaatttgacatGACAGGAGTACTCTTAGAGTCATGACAGAAAATGGCTCTCAGGTTGTTATTAAACATATACACCCCTGTACATTCCAAAGACAATGCTGACTATTATACAAATGGGAACATAAGCAACTtttacagaccatcccctggcatggcgcagtactatattagcacactacccatCTGTTAAGAGGGAGGGTGTTAGCAATGGGTGGAAACTGAGTGAGCCAATGTCAACCTCTACAAGTCTGGAACAATAATGGTCCAGGGAAAccacaaacagtttcagctggactttcacataATCAAAGAGAGAGAGTTTATCCTGTTGAGCTGTCTTGAGAAAGATAACCCCACACCGAAATCAGAGGTAGGTAGCcttgtttgtgggtagttgtttcctgttttgtgttttcacctttcaggactctttcgattttcatttcttacatacactttgttattttgtattttcgtgtTCTGGTATAATAAATGATCATGGACACTTaacacgctgcgttttggtctgaACCTTCCTTCTCCTCATCCGATGAAGACGAAGATCGTTacagtgggatatgcgtcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675033 lncRNA upstream 16836 27429577 ~ 27429873 (+) True G592111
TU675016 lncRNA upstream 40977 27405533 ~ 27405732 (+) True G592095
TU675008 lncRNA upstream 45895 27400595 ~ 27400814 (+) True G592087
TU675003 lncRNA upstream 50457 27395982 ~ 27396252 (+) True G592082
TU674923 lncRNA upstream 100892 27345581 ~ 27345817 (+) True G592002
TU675050 lncRNA downstream 2913 27450997 ~ 27451257 (+) True G592128
TU675052 lncRNA downstream 6708 27454792 ~ 27455043 (+) True G592130
TU675054 lncRNA downstream 9923 27458007 ~ 27458271 (+) True G592132
TU675057 lncRNA downstream 36951 27485035 ~ 27485772 (+) True G592135
TU675068 lncRNA downstream 39470 27487554 ~ 27487859 (+) True G592146
XR_005052558.1 mRNA upstream 851558 26585519 ~ 26595151 (+) True LOC118965273
XM_021608970.2 mRNA upstream 903025 26535783 ~ 26543684 (+) False n6amt1
XM_021608977.2 mRNA downstream 10610 27458694 ~ 27482580 (+) True LOC110527592
XM_021608978.2 mRNA downstream 57825 27505909 ~ 27554755 (+) False LOC110527593
XM_021608988.2 mRNA downstream 406214 27854298 ~ 27874521 (+) False plekha3
XM_036983103.1 mRNA downstream 697452 28145536 ~ 28165219 (+) False LOC100653476
XM_021608991.2 mRNA downstream 697456 28145540 ~ 28168201 (+) True LOC100653476
TU673831 other upstream 868776 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 893167 26552554 ~ 26553542 (+) True G590936
TU672748 other upstream 1421400 26003930 ~ 26025309 (+) True G589933
TU672520 other upstream 1838103 25603605 ~ 25608606 (+) True G589734
TU671438 other upstream 2541128 24904331 ~ 24905581 (+) True G588755
TU675056 other downstream 34966 27483050 ~ 27483796 (+) True G592134
TU675374 other downstream 255499 27703583 ~ 27707294 (+) True G592445
TU675449 other downstream 405922 27854006 ~ 27874421 (+) True plekha3
TU676138 other downstream 1387125 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 1444079 28892163 ~ 28892425 (+) True G593171

Expression Profile