RNA id: TU675204


Basic Information

Item Value
RNA id TU675204
length 2701
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G592281
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27459229 ~ 27477519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCTTAAGAGAGAAGTTTGGGGTTTCCGCCCAACTGGAGGTATTTCCCTCTAACTCTATCCTCACTCTGAATTTATAATTTCCATGGCAACTGGGAAGTTTACCGAAGTCACACCTGTGCTCTTTGGTGGCTTTACATACGGTGTAGAAGGAGGCAGTTGAAGTCATTCTGAGTATCAGACAATAACAAGAGGTTAACATTTTAATTGCATTTTTTTGTGGCATCGATGTGTTATAACAGTGCCTTTATGTTGCTTTACTATTaagtagagaggagaaaacacACAGCTGATTTGGCAAGGTATTCCAAAATAACATAACACTTGTTAATTAATGAATGTCAAAAAAAGTAGCTACAAACTCAATAGCTCTGATGCAATTGATTCATTTGACAGGAAATCCTCTTCATTCGCTTAATTTCTCAAGGTTATGTTACTACCTGTTTTATAAAAATCAAAAaagtgctgtttttttttttgcaggtgTGTGCGTCTTGTTCTCTTCCAGAAAAGACGGGACGTTTTTAGTtcctatactgtatgtatggtcatATCAATGCCCTATCATTGTTCACAACTTCCCCTCTCAGTGAAGTTCCTCATGCAGAtttagaatcttaatttgagtcagtttgctaaagcaggaaaataatcctgcagcatcaGGACATTTGAATTATTAAGTGGatgtataattattattattttcttgtAGGGGCTGTTAGGgcaatcaagtctgacattttaaaccttgaatacactgaGAAAATTCTCAGgcacaaaagagtgatcaaattaagatcctacatctgtataaccACAGACATAATGGTACTGATACTCTCACACTATGGCAAAATTTCAACATGTCAATGAAGTGCATGGCCCTATTCCCTGTACGATAGATATGGCGAAAGAGATTTCTCCTTATCAATTCTTTGTCCACAGCTCAAATTGACCATAAATATCACAGTGGCCACTAGCCAGGGAGCACAAACTATTTAACAATATTGAATAATTCAACCACGCCATATTACACTCTTAAATAATGCAACAATCCACAAGCATGTGGAGACAATGGAAGTTAGCAGCTTACTCCTGCTAACTAACAACATGATTCATGATCAAGTAACGTTGACGTATTGTTAATAAACATATTCATTTAAATGTACAGTGAAGTATTATAACTTTGTTAttcacagttgaagtcgtaagattacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcctgttaattaacataggttggagtcattaaaactcgtttttcaaccactccacaaatttcctgttaacaaactaaagttttggcaagtcagttaggatatctactttgtgcgtgaccagtatttttccaacaattctttacagacagattatatcatcgaatcacaattccagtgagtcagaagttttcatacactaagttgactgtgcctttaaacagcttggaacgtTTCATAACATTATgtaatgtctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggccaaccttcaaactcagtggctcttcgcttgacatcatgggaaaatccaaaaaatcagccaagacctctgaaaaaaattatagacctccacaagtctggttcatccttgggagcaatttcaaaatgcctgaaggtaccacgttcatctctacaaacaatagtacgcaagtataaacaccatgggaccatgcagccgtcataccgctcagtaaggagacgggttctgtttcctagagatgaacgtactttggtttgaaaagtgcaaatctatcacagaacaacaggaaaggaccttgtgaagatgcaggaggaaacaattacaaaagtatctatattcacagtaaaacagtcctttatcgacataatctgaaaggccgctcagcaaggaagaagccactgctccaagaccgcgataaaaaagccagactaaggtttgcaaccgcacatgggaacaaagatcttactttttggagaattgtcttctggtcagatgaaagaaaaatagaactgtttggccataatgaccattgttatgtttggaggtaaaagggggaggcttgcaagccgaagaacaccatcccaaccatgacgCATGAGGATaccagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagataggaaaattatgtggatatattgaagcaacagctcaagacatcagtcaggaagttaaagcttggttgcaaatgggttttcaaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggcattggagtggccatcacaagccctGTCTTCAAGCTGTCAGTAAATGTGTGGTCAgacctgaaaaagcgtgtgtgagcaaggagtcctacaaacctgactcagttacacaagctctgtcaggaggaatgggacaaaattcacccaacttattgtgggaagcttgtggaaagatacccaaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaactactaattgagtgtatgtaaacttctgacccactgggaatgtAATGAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675214 lncRNA downstream 1189 27457812 ~ 27458040 (-) True G592290
TU675213 lncRNA downstream 1487 27457524 ~ 27457742 (-) True G592289
TU675206 lncRNA downstream 11897 27446675 ~ 27447332 (-) True G592282
TU675022 lncRNA downstream 41399 27412951 ~ 27417830 (-) True G592101
TU674996 lncRNA downstream 69691 27389222 ~ 27389538 (-) True G592075
TU675225 lncRNA upstream 7010 27484529 ~ 27486136 (-) True G592299
TU675226 lncRNA upstream 12735 27490254 ~ 27490482 (-) True G592300
TU675267 lncRNA upstream 82442 27559961 ~ 27560235 (-) True G592341
TU675279 lncRNA upstream 101369 27578888 ~ 27579168 (-) True G592353
TU675285 lncRNA upstream 108034 27585553 ~ 27585774 (-) True G592359
XM_036983098.1 mRNA downstream 316588 26729638 ~ 27142641 (-) True LOC110527591
XM_036983097.1 mRNA downstream 593460 26729638 ~ 26865769 (-) False LOC110527591
XM_036983099.1 mRNA downstream 593460 26729638 ~ 26865769 (-) False LOC110527591
XM_036983100.1 mRNA downstream 593460 26729638 ~ 26865769 (-) False LOC110527591
XM_021608973.2 mRNA downstream 873704 26575972 ~ 26585525 (-) False LOC110527590
XM_021608979.2 mRNA upstream 144187 27621706 ~ 27691752 (-) True fam155a
XM_021608980.2 mRNA upstream 225934 27703453 ~ 27707840 (-) True LOC110527595
XM_036983101.1 mRNA upstream 266444 27743963 ~ 27765935 (-) False irs2a
XM_021608983.2 mRNA upstream 304418 27781937 ~ 27785215 (-) True LOC110527597
XM_021608981.2 mRNA upstream 308424 27785943 ~ 27795723 (-) False LOC110527596
TU674725 other downstream 292761 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 873722 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 1300924 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 1913811 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 2168624 25248680 ~ 25290605 (-) True LOC110527565
TU675224 other upstream 5438 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 1546888 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1939336 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 2090682 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 2112474 29589993 ~ 29625899 (-) False G594905

Expression Profile