RNA id: TU675225


Basic Information

Item Value
RNA id TU675225
length 1608
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G592299
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27484529 ~ 27486136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAacgcaaaacagtgtgttttattcaggtatttggtgacatgaatatgtttagtatagttttatctaacaagaatacatttttttatatttcatTATTCTTTGAGTAGGATGGCATTCCTCGTCCTCGTCCACTTTGTGAGAGGTGTTGATGGATGAGTGGAGGATCTTGATAGTAAGTTGAAGCAGACATATGCACTACCAGAGCAAGAATAATGCAGTGAATTTGGTCCAAAAGGGGGAAGTGAACattaaaaacaaacacatttacacAACTCATGACTCCTTTATTATGAATCATCTAAATGaacgactattgtagctggaaactgatgatttttaatggaatatctacataggcgtacagaggccctttATCAGCTATCATCACCCCTATGTTCCAatagcacattgtgttagctaatccaaattatcattttaaaaggctaattgatcattacaaaacccttttgccattatgttagcacagctgaaaactattgtgctgatttaaagaagcaacaaaactgccttctttagactagttgagtatctggagcaccagcatttgtgggtttgattacaggctcaaaatgtccagaaacaaataacgtTATTCTGAAACTCTttcagtttattcttgttctgagaaatgaaggctattccatgtgagaaattgccaagaaactgaagatctcatacaacgctatgtactactcccttcacagaacacggcaaactggctcaaaaccagaatataaagaggagtgggatgcaccagtgcacaactgagcaagaggacaattaaattagtgtgtttagtttgagaaacagacacctcacaagtcctcaactggcagcttcagtaaatagtacccgcaaaacaccagtctcaacatcaacagtgaagaggcgtctccggaatgctggccttttaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaatactaagatgggcaaaagaacatagacactggacagaggaagattggaaaaaaagtgttatggacagacaagtCTAAGTTTGAGGTTTTCGGATCACAAAGAGGAACATTcatgagacgcagaaaaaatgaaaagatgctggaggagtgcttgatgccATCTGTCAAGTATGGTGGAggtaatgtgatggtctgggggtgctttggtggtggtcaAGTGGGAAATTTGTAGAGGGTGAAAGGAAttttgaagaaggaaggctatcactacATTTTGCatcgccatgccataccctgtggaggGCGCTTTATTGGagacaatttcctcctacaacaggacaatgatccaaagcaaAACATCAAACTACGGAAGAAGCAGTCGGCTGGTaatctgtctataatggagtggccagcacagtcaccggatctcaaccctattgagctgttgtgggagcagcttgaccgtatggtacataagaagtgcccatgaagccaatccaatttgtgggaggtgcttcaggagcatggggtgaaatctcttcagattacctcaacaaattgacaactagaataccgaaggtctgcaaggctgtaatttctgcaaatggaggattctttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675204 lncRNA downstream 7010 27459229 ~ 27477519 (-) True G592281
TU675214 lncRNA downstream 26489 27457812 ~ 27458040 (-) True G592290
TU675213 lncRNA downstream 26787 27457524 ~ 27457742 (-) True G592289
TU675206 lncRNA downstream 37197 27446675 ~ 27447332 (-) True G592282
TU675022 lncRNA downstream 66699 27412951 ~ 27417830 (-) True G592101
TU675226 lncRNA upstream 4118 27490254 ~ 27490482 (-) True G592300
TU675267 lncRNA upstream 73825 27559961 ~ 27560235 (-) True G592341
TU675279 lncRNA upstream 92752 27578888 ~ 27579168 (-) True G592353
TU675285 lncRNA upstream 99417 27585553 ~ 27585774 (-) True G592359
TU675293 lncRNA upstream 109445 27595581 ~ 27598399 (-) True G592366
XM_036983098.1 mRNA downstream 341888 26729638 ~ 27142641 (-) True LOC110527591
XM_036983097.1 mRNA downstream 618760 26729638 ~ 26865769 (-) False LOC110527591
XM_036983099.1 mRNA downstream 618760 26729638 ~ 26865769 (-) False LOC110527591
XM_036983100.1 mRNA downstream 618760 26729638 ~ 26865769 (-) False LOC110527591
XM_021608973.2 mRNA downstream 899004 26575972 ~ 26585525 (-) False LOC110527590
XM_021608979.2 mRNA upstream 135570 27621706 ~ 27691752 (-) True fam155a
XM_021608980.2 mRNA upstream 217317 27703453 ~ 27707840 (-) True LOC110527595
XM_036983101.1 mRNA upstream 257827 27743963 ~ 27765935 (-) False irs2a
XM_021608983.2 mRNA upstream 295801 27781937 ~ 27785215 (-) True LOC110527597
XM_021608981.2 mRNA upstream 299807 27785943 ~ 27795723 (-) False LOC110527596
TU675224 other downstream 749 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 318061 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 899022 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 1326224 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 1939111 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 1538271 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1930719 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 2082065 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 2103857 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 2109880 29596016 ~ 29599570 (-) True G594905

Expression Profile