RNA id: TU675325



Basic Information


Item Value
RNA id TU675325
length 204
lncRNA type intronic
GC content 0.53
exon number 1
gene id G592398
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27648783 ~ 27648986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctacggagagcgtgatcacacagtcgtccggaacagctctcatgcatgcctcagtgttgcttgcctcgaagcaagcatagaagtgatttatctcgtctggtaggctcgtgtcactgggcagctcacggctgtgcttccctttgcagtctgtaatagtttgcaagccctgccacataagacgagagtctgagccggtgtagtat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU675305 lncRNA downstream 39064 27609337 ~ 27609719 (-) True G592378
TU675293 lncRNA downstream 50384 27595581 ~ 27598399 (-) True G592366
TU675285 lncRNA downstream 63009 27585553 ~ 27585774 (-) True G592359
TU675279 lncRNA downstream 69615 27578888 ~ 27579168 (-) True G592353
TU675267 lncRNA downstream 88548 27559961 ~ 27560235 (-) True G592341
TU675326 lncRNA upstream 32 27649018 ~ 27649491 (-) True G592399
TU675327 lncRNA upstream 652 27649638 ~ 27649848 (-) True G592400
TU675329 lncRNA upstream 2496 27651482 ~ 27651901 (-) True G592402
TU675332 lncRNA upstream 8125 27657111 ~ 27657315 (-) True G592405
TU675341 lncRNA upstream 33722 27682708 ~ 27682915 (-) True G592413
XM_036983098.1 mRNA downstream 506142 26729638 ~ 27142641 (-) True LOC110527591
XM_036983097.1 mRNA downstream 783014 26729638 ~ 26865769 (-) False LOC110527591
XM_036983099.1 mRNA downstream 783014 26729638 ~ 26865769 (-) False LOC110527591
XM_036983100.1 mRNA downstream 783014 26729638 ~ 26865769 (-) False LOC110527591
XM_021608973.2 mRNA downstream 1063258 26575972 ~ 26585525 (-) False LOC110527590
XM_021608980.2 mRNA upstream 54467 27703453 ~ 27707840 (-) True LOC110527595
XM_036983101.1 mRNA upstream 94977 27743963 ~ 27765935 (-) False irs2a
XM_021608983.2 mRNA upstream 132951 27781937 ~ 27785215 (-) True LOC110527597
XM_021608981.2 mRNA upstream 136957 27785943 ~ 27795723 (-) False LOC110527596
XM_021608982.2 mRNA upstream 136957 27785943 ~ 27795724 (-) True LOC110527596
TU675224 other downstream 165003 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 482315 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1063276 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 1490478 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 2103365 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 1375421 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1767869 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 1919215 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 1941007 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 1947030 29596016 ~ 29599570 (-) True G594905

Expression Profile