RNA id: TU675201


Basic Information

Item Value
RNA id TU675201
length 86
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G592278
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27691604 ~ 27691689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGTGCCAGAGATGTTGTCTTTTGATGTCCACTGTCATCTCGGTCCTGGGTTAGTTGTCGCCATCGTGTTCTTCTTGGAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675187 lncRNA upstream 23834 27667554 ~ 27667770 (+) True G592264
TU675143 lncRNA upstream 114136 27577163 ~ 27577468 (+) True G592220
TU675141 lncRNA upstream 117705 27573696 ~ 27573899 (+) True G592218
TU675134 lncRNA upstream 126019 27565380 ~ 27565585 (+) True G592211
TU675090 lncRNA upstream 129469 27561587 ~ 27562135 (+) True G592167
TU675360 lncRNA downstream 5957 27697646 ~ 27697944 (+) True G592432
TU675366 lncRNA downstream 7388 27699077 ~ 27699421 (+) True G592438
TU675372 lncRNA downstream 10797 27702486 ~ 27702807 (+) True G592444
TU675378 lncRNA downstream 20964 27712653 ~ 27712787 (+) True G592447
TU675403 lncRNA downstream 34215 27725904 ~ 27726181 (+) True G592472
XM_021608978.2 mRNA upstream 136849 27505909 ~ 27554755 (+) False LOC110527593
XM_021608977.2 mRNA upstream 209024 27458694 ~ 27482580 (+) True LOC110527592
XR_005052558.1 mRNA upstream 1096453 26585519 ~ 26595151 (+) True LOC118965273
XR_002474143.2 mRNA upstream 1147920 26535783 ~ 26543684 (+) False n6amt1
XM_021608988.2 mRNA downstream 162609 27854298 ~ 27874521 (+) False plekha3
XM_036983103.1 mRNA downstream 453847 28145536 ~ 28165219 (+) False LOC100653476
XM_021608991.2 mRNA downstream 453851 28145540 ~ 28168201 (+) True LOC100653476
XM_036983104.1 mRNA downstream 529936 28221625 ~ 28258442 (+) True LOC118965275
XM_021608995.2 mRNA downstream 614578 28306267 ~ 28368030 (+) False LOC110527602
TU675056 other upstream 207808 27483050 ~ 27483796 (+) True G592134
TU673831 other upstream 1113671 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 1138062 26552554 ~ 26553542 (+) True G590936
TU672748 other upstream 1666295 26003930 ~ 26025309 (+) True G589933
TU672520 other upstream 2082998 25603605 ~ 25608606 (+) True G589734
TU675374 other downstream 11894 27703583 ~ 27707294 (+) True G592445
TU675449 other downstream 162317 27854006 ~ 27874421 (+) True plekha3
TU676138 other downstream 1143520 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 1200474 28892163 ~ 28892425 (+) True G593171
TU676297 other downstream 1368009 29059698 ~ 29064592 (+) True G593283