RNA id: TU677068


Basic Information

Item Value
RNA id TU677068
length 1345
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G593970
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27871365 ~ 27874514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCTTTTTAAGACACATCTTTACATTTCAAACATACAGTCACATAACTCCTTCCATGCCCAGAATCTCTGTTAAGGCATTACTCTTTTTTGGTGGATGTAATGAATGGCAAAcataactttaaaaaaataacaataaaaagtGTCTGTCACATAGCAATATGGTGAACACTGGGGGCGTGCCAAATTTGAAATATTGGGCAAGTTTGTTTTGCATCTCCCAGTGACTTGGGAGGGTGGAGATTTCACTGTAGGACCAATGGAATCGTCTAAAATAGACAAAACTTTGCCCATCCGGGGTACCAGGAGATGCATGTGAACTCAGCCCATTGATGAAAATGTACCCACATCCACACATTCTGAATTGGTCCTTGGCACAGTTAGCAACCCTAACGTTTAAGGGTTTTGGTTAAAGGCTAATATGTCCCTCCTCTGTGTTTCAAGGACAATTTTTCACTCCATAGTGAATGAACAGTAATGTTGCATATCAAACATTTTATTCTGCAATAATAACATAAAACTTCCTGGAATAGTACAAACATTCAAAAAGGACTTTGTTTTGATCCATAATTCTTAAAGTGCAAAGCAATGCTTCCACAGGAAAAAATACAATACTTTTTGAAAATACCATTAACGCATTGCCAAGCAGTGACTGCATTGCAGTATGTGAGCAATAAAAGCTGGGGAGTGTTCATTAGGCACTGAAGGGAAGAAAATGACAGGGAAGGACAACTAGAGTTGTTCAATAAGAAAcactcatttttttttttttgttttaaaacttttttccattgcgtgccctaatgaacacaaccttaGTAACACCTCACATTACAGTAGCCTCAGATCAGTCTAACTTCAGTAGAGTAACTGAAGTACCTGATACATTCAGCTATTCACGCTTTAGCCAAGTTATTATTCAGAAAAGATAGACAGTACTATGCCTACAAGTTTGCACAGGCCTACTGACCAGACGGACCAGTCACTTGACAGCAGACGACCAATCTCAACTCCAGGACCTggattcacaaaacacttctaAAGTCTCTTTATCTGAAGATACTGCAATGTATTTGGTGAGTGACAGGACAGGTCAGATGGACAGGTCAGTATCTGGAGTGTCTGACATAGCTCGGGGACTGGTAGGACTGATGGCACCACACTCCTCAGGGATACTGTGGGAGGAGTCCCCGTTCACACTGGCATTGAGACACAGCACAGCAGTGCCTCTTACGGTCCATCTCGTAAACACAGCTGTCACTGTGAGCCTCTGTGTCCGAACAAGTCCGTGTCCTCCTCTGGGTTGACCTTTGACCTGATAACACACCCTCCTTTGGCGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676970 lncRNA downstream 127288 27741604 ~ 27744077 (-) True irs2a
TU676986 lncRNA downstream 136358 27734612 ~ 27735007 (-) True G593896
TU675389 lncRNA downstream 158162 27712903 ~ 27713203 (-) True G592458
TU675388 lncRNA downstream 158556 27712529 ~ 27712809 (-) True G592457
TU675387 lncRNA downstream 158965 27712075 ~ 27712400 (-) True G592456
TU677087 lncRNA upstream 12789 27887303 ~ 27888964 (-) True G593982
TU677091 lncRNA upstream 18989 27893503 ~ 27894065 (-) False LOC110527600
TU677093 lncRNA upstream 19781 27894295 ~ 27894508 (-) True G593987
TU677092 lncRNA upstream 20105 27894619 ~ 27894915 (-) True LOC110527600
TU677094 lncRNA upstream 20954 27895468 ~ 27895771 (-) True G593988
XM_036983102.1 mRNA downstream 17846 27813171 ~ 27853519 (-) True ankrd10a
XM_021608986.2 mRNA downstream 30076 27802077 ~ 27841289 (-) False ankrd10a
XM_021608985.2 mRNA downstream 30076 27813171 ~ 27841289 (-) False ankrd10a
XM_021608987.2 mRNA downstream 30076 27813171 ~ 27841289 (-) False ankrd10a
XM_021608982.2 mRNA downstream 75641 27785943 ~ 27795724 (-) True LOC110527596
XM_021608990.2 mRNA upstream 15892 27890406 ~ 27987161 (-) False LOC110527600
XM_021608989.2 mRNA upstream 15892 27890406 ~ 28034304 (-) False LOC110527600
XM_021608264.2 mRNA upstream 301519 28176033 ~ 28177839 (-) True LOC110527106
XM_021608998.2 mRNA upstream 425193 28299707 ~ 28306319 (-) True LOC110527603
XM_036983109.1 mRNA upstream 706674 28581188 ~ 28603857 (-) False LOC110527604
TU675224 other downstream 387585 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 704897 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1285858 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 1713060 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 2325947 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 1149893 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1542341 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 1693687 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 1715479 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 1721502 29596016 ~ 29599570 (-) True G594905

Expression Profile