RNA id: TU677235


Basic Information

Item Value
RNA id TU677235
length 4195
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G594126
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28168349 ~ 28173047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtattctgtgcatgtgacaaataacatttgatttgaaataacatCAGGGTCACAgctgttgaaggaagtggaccaaggtgcagcgtggtgtgcatacattttctctttatttggaAAAGACGCAGAacaagaacaaaaacaacaaacactacacaaaaaaaaatgtgaagCTAAAGGCTGAGGCTAAACAAAAGTCAACTTCCCAAAAAGACAGGTGgaaaaaaaggctacctaacaacgctagacagctgtccctgattgagaaccctacccggccaaaacatagaaatacaaataatagaatatagaatacccaccccaactcacaccctgaccaaaccaaaataaagacataaacaggatctctaaggtcagggcgtgacaatcagACTTTGGGAATACAAACACACTGCTTGGACATTTCAGTAAGAAGATATTTAATGATCAACATTCATAATGGATGGCAATGAAAATGTTTCTTAAATGAAATGATGATTATAGTACAGATGACACCTGTAGTATGTGGGTTAATTTTGGGTCAAGTATGGTACTGGTGAGGCATGTATGGTGTTAACCAATGCCACCATATAGCGCCTTGAAGAGTTGCAAATGCATTCAAACCAGTGGTTTCTAGAATAAGCACTTTCCTTACTTGAAATCAGTTCAACTTCAGGTAATTGGTAACATCCTAAAGACAAGTACCATTTAGTGGAAGTGACAAACAGAGGTCGTGCATTTCCAAAATAACTGAGGGTGTCAACCTGTCTTTTTAAAAGTTAAGAAAATAAAACATACCACATTTCAGTGCAATAGAGTGCTGAGGTGTGCCGGTGTCATTTTGTAGTACACAAAGCAAAGAAGTGATTTGCTGCCATTTGCCCCCATCCATTTTCCCACAAGATAGATTTTTTATAGCGATAAAAAGGTCTGTGTAAGACTTAGGCCAACTAATTACAATGTGTTTTTTTAACCAAATTAATATCTTTAAGAGGTTTTTAGTCTTTATTTTTAGTCAAAGATTGATTGACATCACCTCAGAACAATAGCTAGTCAGTACACCTACATGCTACACAGACCTTATTGTAGCTATCTAAAATAATCACTGTGAAAACATCGGTGAAATTTGATTAGAACCAGGCAGTCAGACTCGGCCTACAAAATGACAACACCTTGTCTCCCTGTACAGGAATAACTAATCATTTACAGCATggtacaatgttttttttttttacaaaaacaatACTGCAATTTAGATGGCATGTAGTCTATTGAAATTTAGAATAACATTTGAGACATTTCAAAAACTTGAGTTGCATAGAAAACATCATTGCCTTTCAAAAGCTGAGCATTTTTCTAGTTCCTATATCAAATTTTGTTTGCTTTTGTTCATGTAGGTTAATCTCAAGATGTCTCTTGTCAATATAAAGTGCATTTTGTAATTTCCCTCTGAATTCCTATAAATCCACATAACAAAATAATATTTTAAGTGTGTCTATTTGCCAGTTTTTCTCCTACGActtcattattattataatatttaactaggcaagtcagctaagaacacattcttatttacagtgacggcctaccagggaacagtgggttaatggcagatttttaccttgtaggTTTGGGGATTCAAtcctgcaacctttcagttacttgcgcaccgatctaaccactaggctgcctgccacccccaatacagtggcttgtgaaagtattcaccccgctTAGCATTTATCCTATTCTGTTGCCTTACACCCTGTAATTAAAATAGATTCTTCAgggatttgtatcatttgatttacacaacatgcctaccactttgaagatgcaaaatatgatcctacttgagacgcagacgtctcaactaggcacctggaaatgcaaatgcgctacgctaaatgctaaatgtactcgttaaaactcaaacgttcattaaaacacacatgcagggtatcgaattaaagctacactcgttgtgaatctagccaacaagtcagatttttaaaatgcttttcggcgaaagcatgagaagctattatctgatagcatgcaacaccccaatatacctgaaggggacgtaaacaaaatagcgtagccggcgctacacaaaacgcagaaataaaatataaaacattcattacctttgatgatattctttgttggcactcctatatgttccataaacatcacaattgggtcttttttccgattaaatccgtccatgtatgcccaaaatatccatttgtatagcctgtctggttcaggaaaaaagctctcttccaacacgcaacgtcatttttaaaaattatataagttgcctatattctttgacaaaacacttcaacctacttttgtaacccaactttaggtatttgtaaacgtgaataagcgatcaaattgatcactgggcgatctgtattcaatagcagctactcaagaaaacaatgtccctttttctcttttccaaaatcgattgctgtatgctggacggaatgaaggatctatttgtcatgacacaaaggatttttgtcaatgaaaatgacgtttttggctatatcgtgtggaagctgtaggaattgcaatctcggtcctatttaatttggtgccccttaaacaatacatgcaagtggcgcatggatatttttttcagttttcagtgaccagtttttatagcgcttttcgatgaaacacacgctctgttatagtcacagccgtgatttaaccagttttaaaAACTCATTTTtgtgttacttacaacctcatgcttatcgcattagcctacgttagctcaaccgtcccgtggaagggacactgatctcgacaaagttaatggtgctccgtgggatgttcaaagattccgatattttttataacccaaccctgatctgtacttctccacaaatgtgcccctgacctgtttggagagctccttggtattCATAGTgcagcttgcttggtggtgccccttgcttagtggtgttgcagactctggggcctttcagaacaggtgtgtatgtactgagatcatatgacacttagattgcacacaggtggactttttttaactaattatgtgacttctgaaagtaattggttgcaccagatcttatttaggggcttcataacaaagtgggtgaatacatacagtggggagaacaagtatttgatacatcagaaaagcagaacttaattttggtacagaaacctttgtttgcaattacagagatcatacatttcctatagttcttgaccaggtttgcacacactgcagcagggatattggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatatggacttttagctccctccaaatatgttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttacggagacactccttagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgctcttactgagtgAAGGagattgttggccaagatcttgcgatacatggccacatccatcctccccttaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgatgtttccacctccatacttcacggttgggatggtgttcttggggttgtactcatccttcttcttcctgcaaacacggcaagtggagtttagaccaaaaagctcaatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaaacttcagacgggcctggacatgcgctggcttgagcaggggtaCCTtacgtgcgctgcaggattttaatccatgacggcgtagtgtgttactaatggttttctttgagactgtggtcccaactctcttcaggtcattgaccaggtcctgccatgtagttctgagCTGATCGCTCACCTTcctgagttcaaacaggtgagttcaaacaggtgcagtttttacaggtaatgagtggagaacaggagggcttaaagaaaaactaacaggtctgtgagagctggaattcatACTGGTTGGTAGGAGCTCaagtacttatgtcatgcaataaaatgcaaattaattagttaaaaatcatacaatgtgattatctgaattt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677249 lncRNA downstream 44617 28121003 ~ 28123732 (-) False G594138
TU677250 lncRNA downstream 44617 28121003 ~ 28123732 (-) False G594138
TU677251 lncRNA downstream 44617 28121003 ~ 28123732 (-) True G594138
TU677133 lncRNA downstream 213793 27954331 ~ 27954556 (-) True G594026
TU677125 lncRNA downstream 222146 27945751 ~ 27946203 (-) True G594018
TU677328 lncRNA upstream 93694 28266741 ~ 28268690 (-) False G594207
TU677327 lncRNA upstream 93805 28266852 ~ 28269332 (-) False G594207
TU677330 lncRNA upstream 100155 28273202 ~ 28290556 (-) True G594207
TU677378 lncRNA upstream 182358 28355405 ~ 28356279 (-) True G594251
TU677370 lncRNA upstream 194114 28367161 ~ 28370155 (-) True G594243
XM_021608989.2 mRNA downstream 134045 27890406 ~ 28034304 (-) False LOC110527600
XM_021608990.2 mRNA downstream 181188 27890406 ~ 27987161 (-) False LOC110527600
XM_036983102.1 mRNA downstream 314830 27813171 ~ 27853519 (-) True ankrd10a
XM_021608985.2 mRNA downstream 327060 27813171 ~ 27841289 (-) False ankrd10a
XM_021608264.2 mRNA upstream 2986 28176033 ~ 28177839 (-) True LOC110527106
XM_021608998.2 mRNA upstream 126660 28299707 ~ 28306319 (-) True LOC110527603
XM_036983109.1 mRNA upstream 408141 28581188 ~ 28603857 (-) False LOC110527604
XM_021608999.2 mRNA upstream 408141 28581188 ~ 28615568 (-) False LOC110527604
XM_021609000.2 mRNA upstream 408141 28581188 ~ 28615568 (-) False LOC110527604
TU675224 other downstream 684569 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 1001881 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1582842 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 2010044 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 2622931 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 851360 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1243808 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 1395154 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 1416946 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 1422969 29596016 ~ 29599570 (-) True G594905

Expression Profile