RNA id: TU677327


Basic Information

Item Value
RNA id TU677327
length 1985
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G594207
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28266741 ~ 28290556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accatgtcgatcaacgcttgaatagaaacgtagttcacgCCCCAGATTTtcaagtcaacacagtcgctacagtcccattagttttctttgtagcctcgtttgaatgttgcggttgcgctcATTTGTACGGAATGGAGTGAGTTTACATTATAATCATATTTCATGACAGTGTAACAGTTTCCCTTTTTTTTACAGAAGGATGAAAGAACACAATATGTTTGTCAGGGAATGCTATTCTGATATGTCATATAAAGAGTTAGACCAGAAAGTCAACGCCATTAAGACAAGGATTCCCCATGCTGGCTTTAGAATGGTCAAAGGATGTCTCAGAGCAATGGGCCATCGTGTACAATGGTGAAGAGTTAGAGAGTCTTTGCAGCGTGTAGATGGTGGAGGTATCATTGCCAGAGTGATCCAGCTTTGTTGCATTGCTCGGCAAAAATACTCTGTTCCTGCACCCCCTGTCTTGCTTGATTTGCTTGATACAAATCATAAATTGATAAGGTATTAAGATATATAATGTCTCGATCAAATCTTAGAAGTTATTTAAACTTTTTTATTCTTTCTTATTCCTAGAAAAATGTTAAATGATGTATGAAATTTGAGTTTTTCTTCATCAACTGGTAATACATAAATAAGGAAGCAGGTTAATAGGTTAaacatttcacttttaattccaATGCTTTTTTTCAAGATACAACAGGTAAGTATATGATTTTGTACACATACTGGATATTTCCCATCAcctaatgaacaaccacaataccagtctggtgttaagctttctgtgctgtattgacgtatcctgaaaatgacatctgctgctttagattgagcggtcatatctcagttattgttttcatatatacaaaaaataagctattttctttactttcagagtGCGAGTTGATCAAGGGGTCGAAAATGTAGACATTGCCAGATGTTCACTATCCGAGGAACAGGCAGTGGAGCTTTATTGCtggcaaaagtgtccataaccagaggtcaTATCAGCAGTGttggtgaacccctcccgcatctgaactggctgacacagagagcacagcatgatcatagctgagaggtcacttggtctgtcacgacttctgccaaagtcggttcctctccttgttcgggcggcgttcgacgGTTGACGTCACCGATCTTCTAGccatccacctttcattttccatttgttttgtcttgttttcccacacaccttgtttacatttccctcattacttgtcctgtatttaaccctctgttcctcccatgtctgtgtgtgtaattgtttattgtcagGTTGGAACACTTCCGGCTGGTTTGCGCCGGGTTCTGTTTTATACCCGTGCTTTGTGGCAGACGCTACTTTGTACGTGGTTGTGGTACTTTGTGCTGCCTCACTTGTTCTTTGGGCATTTCTTTTTGTGACACGTTTGCGTTCTGTTATAATGATTGCCTCAGTAAAGTGCTTTgtccactcatctctgctctcctgcacttgacttctatgcaccagctacacccactgATGACATGGTCGGGTCAACAGGatgtattattaaagagatgctttacattgaaatacagatagagatgtagtagtcccagagttaatgatccaaggtcagatTTGCATTTCACCTGATGATTCTGATGACTGACcgtgttagaataaaaaaaaaacaaggcttaGTCATGCTCtttctctatccatctgtctctcatctCCAGATATGTTTTtatgtgagagaggaagccagtcccgtcatcgccacctcacccactcttaagataacctttgggccaactgggggcccaaggctggttaggagacactgttaaagacactgtaattgtgatgaactaaGAGAATATTAGGGTAACACTGTAATTAATTTAATCATATGTTGTCTGcttctgttcttacctctttccctttctgtcttctacacctctctccccacctcgtatTTCTTCCACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677235 lncRNA downstream 93805 28168349 ~ 28173047 (-) True G594126
TU677249 lncRNA downstream 143120 28121003 ~ 28123732 (-) False G594138
TU677250 lncRNA downstream 143120 28121003 ~ 28123732 (-) False G594138
TU677251 lncRNA downstream 143120 28121003 ~ 28123732 (-) True G594138
TU677133 lncRNA downstream 312296 27954331 ~ 27954556 (-) True G594026
TU677330 lncRNA upstream 3870 28273202 ~ 28290556 (-) True G594207
TU677378 lncRNA upstream 86073 28355405 ~ 28356279 (-) True G594251
TU677370 lncRNA upstream 97829 28367161 ~ 28370155 (-) True G594243
TU677529 lncRNA upstream 269618 28538950 ~ 28539207 (-) True G594394
TU677535 lncRNA upstream 277408 28546740 ~ 28546940 (-) True G594400
XM_021608264.2 mRNA downstream 89013 28176033 ~ 28177839 (-) True LOC110527106
XM_021608989.2 mRNA downstream 232548 27890406 ~ 28034304 (-) False LOC110527600
XM_021608990.2 mRNA downstream 279691 27890406 ~ 27987161 (-) False LOC110527600
XM_036983102.1 mRNA downstream 413333 27813171 ~ 27853519 (-) True ankrd10a
XM_021608987.2 mRNA downstream 425563 27813171 ~ 27841289 (-) False ankrd10a
XM_021608998.2 mRNA upstream 30375 28299707 ~ 28306319 (-) True LOC110527603
XM_036983109.1 mRNA upstream 311856 28581188 ~ 28603857 (-) False LOC110527604
XM_021608999.2 mRNA upstream 311856 28581188 ~ 28615568 (-) False LOC110527604
XM_021609000.2 mRNA upstream 311856 28581188 ~ 28615568 (-) False LOC110527604
XM_036983108.1 mRNA upstream 311856 28581188 ~ 28615593 (-) False LOC110527604
TU675224 other downstream 783072 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 1100384 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1681345 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 2108547 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 2721434 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 755075 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1147523 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 1298869 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 1320661 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 1326684 29596016 ~ 29599570 (-) True G594905

Expression Profile