RNA id: TU675982


Basic Information

Item Value
RNA id TU675982
length 2866
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G593006
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28568098 ~ 28578328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGCAGGATAACAAGATTGTTATATTTATGcaccaaatggttgttttatttaataaagtaaggactctctctctctcctttcagagTTAACTGAGATGAGTCTTTATGGAGCTTGGGCTGGCAACTGATTAAGTGATGGCTTggtgttaaaaaaaaacacagctgGCATTCCATAGAGCAGATGTGGTGGGTGTCACCGAGATGGCcaggaggaacagaacaaagGCCTTACTAGTCCTAATTatcctggcatctgggaaacAGCACGAGAGGCAGATGACCAGAGGAAAACCCAAAGTGGCTTATAGTACCTCCAATGTATATGGGAGAGGTGGAACCAAGCATTCTGGGTATCAGCTATATAAACTGTGCATTGTCTGTAAAGAGTAGGCTCTCAGCTCAACAGTCAAGACTTTTGTGTCAACGGTTTCagtattgcaataattaatcgatattgactaaagatgattgtttgaagaaatgacaaagtctctctcactctctacataGAATATTCCACCATACAATGCTGCCTGTTGGTGATACAACAGCTAAAGGGGAAGTAATCGTGGAAGTGATGAAGTCCAAGTGTGCCTAATGAGGTGCAGGTGTACGTAATGATGGTTGCTATGTGTGCGTAATGATAGTTTGCCAGgactggtggttagtagaccggcaaAGTCGAGCGCCAGAGCGTGATAGAACCCCCACCGACGTGCAGCTCCAGCCACAGGACAGCCCCGAAGGCGAGGAGCGGGCCAGTCGGCGAAGGTGGAAATCTCGGATGATGTTGGGATCTTGAATGTCATCCACTGGAACCCAAAAGCACTCCTCtggaccatacccctcccagtccaccagatacTGGAACTGACCCCCATGACGTCGGGAGTCCAGGAGGGATCTGACGTCATCTGACGGGCTTCCTTCGATGtccaggggaggtggaggggtgtctTTGGAGATGGCATAAGCCAGGAGACCAGAAACCCCCATGCTGATGAGGGAAACATGAAAAGAGGGTGAGATAAGGTAGTTCTAGTGGGGAGCTGTAATTGGTACGTTATTTCATTGATCCAGCTTCCGGTAGGTCAGGCAGAGGGGGAGGTTCCTGGTGGAAGGCAGACGCGATCAACAGGATGAAACACGGGAGCCTCACTGCAGTGGCGGTCCGTCTGCTCTTTCTGGCGGCAGACGGCGCATTGGAGCCTCACCTGGGCAGTGTTCCAAACCTCCTCTGCAGGAGCTTCTGGCTCTCGGTCCACGGAGCCAGGGCCGGTTGGTACCCCGGGACGCACTGGAAGGGTGACAGCCCAGTGGTGGAGTGACAAAGTGAATTCTGGGCATACTCCACCCAGGGAAGGAACCGGGCCCACTTCCCCTGCCGGTCCTGGCAGTGACTCCTAAACTCAGGCACTCTGACCAGCTTGAGCGCAACCAAAACCACGTTTGGCGAATCATCCTTGGCACAGCATATCTCAGATACAAGGCTGCACTAAATTCATTATCACTACCCTCATTACATGAGCAAAGAGATTAATTTTGCCTGGACGTTTTCCTCGTTAAAGGTCCCTTTACAAGACAAGCTAACTGACATCTTATCCACAGCCCAAGACTGAGAGATACAAGCAGTCACACATGCCTTCCTTTGGTCACCCCAAccctaaatgtttttttttaacataaatcagCCTGCTCTCGTCAATGGTTtttgtatgcagatgactctGCTTATGTCCCATAAGAAAATGAAAATACTCAGTGCAGTTATCCAATATCAGCAAATAGATTTTTTGATAAATCTTTCTCTGCATCTTGGAAAAACGCAATCGATCTTATTTGGTTCCAGAGCAAAGCTTGCAAGGTCCCCTGTTTTAGTGTCAAAGTTGGCAACTTAGAAGTtactcttcagtgggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcctggccggttcccatctttccactgggattctctgcctctaaccctattacaggggcttagtcactggcttactggtgctctttcatgccgtccccaggaggggtgtgtcacttgagtgggttgagtcactgatgtgatctttctgtctgggttggcgcaccCCCCTTAGGTtctgccgtggcggagatctttgtgggctatactcggcctggtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtatcatcagatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatttgtcgggggctagggttagtctgttatatctggagtacttcccctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctttctctctctcagaggacctgagccctaggaccatgcctcaagactacctggTATGCTGACTGCTTGCTGTCCCTagttcacctggccgtgctgctgccccagtttcaactgttctggctgcggctatggaatcctgacgtgttcaccggatgtgctacctgtcccagacctgctgtttttaactctagagacagcaggagtggtagagatactcttaatgattggctatgaaaagccaactgacattttactcctgaggtgctgacttgctgcaccctcgacaactactttgattattattatttgaccatgctggtaatttatgaacatttgaacatcttggccatgttctgttataatctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675981 lncRNA upstream 693 28566830 ~ 28567405 (+) True G593005
TU675968 lncRNA upstream 9076 28558685 ~ 28559022 (+) True G592993
TU675965 lncRNA upstream 12889 28554730 ~ 28555209 (+) True G592990
TU675651 lncRNA upstream 395143 28169546 ~ 28172955 (+) True G592699
TU675712 lncRNA upstream 444416 28120990 ~ 28123682 (+) False G592746
TU675997 lncRNA downstream 7970 28586298 ~ 28587444 (+) True G593012
TU676018 lncRNA downstream 32290 28610618 ~ 28618334 (+) False G593028
TU676020 lncRNA downstream 37919 28616247 ~ 28618334 (+) False G593028
TU676017 lncRNA downstream 38853 28617181 ~ 28618334 (+) False G593028
TU676019 lncRNA downstream 38853 28617181 ~ 28618334 (+) True G593028
XM_021608995.2 mRNA upstream 200068 28306267 ~ 28368030 (+) False LOC110527602
XM_036983105.1 mRNA upstream 200068 28306267 ~ 28368030 (+) True LOC110527602
XM_036983104.1 mRNA upstream 309656 28221625 ~ 28258442 (+) True LOC118965275
XM_021608991.2 mRNA upstream 399897 28145540 ~ 28168201 (+) True LOC100653476
XM_036983103.1 mRNA upstream 402879 28145536 ~ 28165219 (+) False LOC100653476
XM_021609004.2 mRNA downstream 88088 28666416 ~ 28686793 (+) True mtx2
XM_021609008.2 mRNA downstream 176148 28754476 ~ 28769421 (+) False LOC110527611
XM_021609009.2 mRNA downstream 176148 28754476 ~ 28769421 (+) False LOC110527611
XR_002474145.2 mRNA downstream 176148 28754476 ~ 28780185 (+) False LOC110527611
XR_002474146.2 mRNA downstream 176148 28754476 ~ 28780185 (+) False LOC110527611
TU675449 other upstream 693677 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 860804 27703583 ~ 27707294 (+) True G592445
TU675056 other upstream 1084302 27483050 ~ 27483796 (+) True G592134
TU673831 other upstream 1990165 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 2014556 26552554 ~ 26553542 (+) True G590936
TU676138 other downstream 256881 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 313835 28892163 ~ 28892425 (+) True G593171
TU676297 other downstream 481370 29059698 ~ 29064592 (+) True G593283
TU676195 other downstream 751344 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 949699 29528027 ~ 29528910 (+) True G593513

Expression Profile