RNA id: TU676347


Basic Information

Item Value
RNA id TU676347
length 1515
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G593324
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29148572 ~ 29150344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGACATTGGGGATATCCCACCTAGAAAAATGTTGTTGAAAATAAAACTATGCCCGACGTACAATATAAGCTTGGTTTTAGTTGAAAAGAAAACTATTTAATTTCAACGTACTTGCAGCTTATACACATGGACACAGTATAATAAATCGGTCTATAATCGATTTTATTAACAATCCTAATAAGTTGAgtcataaatataaaatatatatttgttgtcCTAAGGGGAAGGTGTTACAttctttggtttttccatttatattttgaggttggactttagctCGTTAGCATGTAGGATGCattgattggtgtcacctcgttagtcagtatgtggtccatctcgttagtgggaaggtgtttcacctgagctggtccaggttctatttaaaacctgttgaatctagggggcactattttcatttttggaaaaagaatgttcccaaagtaaacgggctattttgtcaggacaaaatgctagaatatgcatataattgacagattgggatagaaaacactctaaagtttccaaaactgtacaaatattgtctgtgagtataacataactgatattgcaggcaaaagcctgagaaaaatccaatcaggaagctctgcgttcctatgcgtccctattgagcagtgaatgagatatcgACTAGattgtctagtgtcacaatacatagtttcaggcttttattttgaaaaatgagcctaaacgtcaacattgcgtcagtggtcagctgtagtctctcagagtgttttgtgcgtaagagacaaatgcggccattgtttctctctttccagAAGCcatctgtcccggttgatatattatcgaatagatatttgaaaaacaccttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttggaatatttttcggcgttgtcgtgaccgcaattttcggtcgaattctcagctgagatgacagggtgattaacaaaaggctaagctgtgttttaatatagttcacttgtgatttcatgaatataaatattttctcgtaatatttatgtccgttgtgttatgctaattagtgtcagttgatgattacgctcccagatccgggatgggtagttacaaGAGGATTtattaagagtgtctggcccagtgctccagttgtcttgatagatgtggagagtctCCACCTTTTTGGTTTCGTCCTGTCTTTAAGTTTTGTTTTCCACTTCTTGAGAagatttagtgggtctcatggtgggtgtctttcaggtcccagttgttgttactagtcaacttCCAGTGCCTCTCCTAAAAAACAAGTGTATATTTTGGGTTGGAAATTGCATCCAATTAATATTTTAATCAATGGTATTTCCTTAGAAAGTTCATTAGTCTTTCAGTTGTTAGTCTTCTGTTTGTTGTGTACtaaatatttgttgttgttttttttctgtgaagccattctgttgcatccatgtctgaaatATGCCGTATAAATGAATGACCAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676346 lncRNA upstream 13657 29134363 ~ 29134915 (+) True G593323
TU676345 lncRNA upstream 14703 29132997 ~ 29133869 (+) False G593322
TU676342 lncRNA upstream 14703 29133294 ~ 29133869 (+) True G593322
TU676335 lncRNA upstream 31849 29115906 ~ 29116723 (+) True G593317
TU676325 lncRNA upstream 43547 29104235 ~ 29105025 (+) True G593307
TU676352 lncRNA downstream 3742 29154086 ~ 29154404 (+) True G593329
TU676353 lncRNA downstream 10851 29161195 ~ 29161697 (+) True G593330
TU676360 lncRNA downstream 18891 29169235 ~ 29173452 (+) False G593334
TU676362 lncRNA downstream 20010 29170354 ~ 29171707 (+) True G593335
TU676361 lncRNA downstream 20511 29170855 ~ 29173452 (+) True G593334
XM_021609022.2 mRNA upstream 49161 29087111 ~ 29099411 (+) True LOC110527621
XM_021609021.2 mRNA upstream 113966 29026331 ~ 29034606 (+) False LOC110527620
XM_036984418.1 mRNA upstream 135321 29010978 ~ 29013251 (+) True LOC110527630
XR_005052564.1 mRNA upstream 156335 28987346 ~ 28992237 (+) True LOC118965280
XM_036983136.1 mRNA upstream 170959 28975483 ~ 28977613 (+) True LOC118965279
XM_036983121.1 mRNA downstream 179240 29329584 ~ 29336284 (+) False LOC110527619
XR_005052561.1 mRNA downstream 179247 29329591 ~ 29364362 (+) False LOC110527619
XM_036983124.1 mRNA downstream 179249 29329593 ~ 29503787 (+) False LOC110527619
XM_036983125.1 mRNA downstream 209331 29359675 ~ 29364362 (+) False LOC110527619
XR_005052568.1 mRNA downstream 239273 29389617 ~ 29396184 (+) True LOC118965283
TU676297 other upstream 83980 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 256147 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 307489 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1274151 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 1441278 27703583 ~ 27707294 (+) True G592445
TU676195 other downstream 179328 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 377683 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 881615 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1752835 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1931377 31081721 ~ 31082290 (+) True G596297

Expression Profile