RNA id: TU676366



Basic Information


Item Value
RNA id TU676366
length 261
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G593337
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29176592 ~ 29182196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggttatgaatgaacaggtataaatgatgggttatgaattaaaaggtttaaatgatgggttatgaattaacaggtataaatgatgggttatgaactaacaggtataaatgatgggttatgaactaacaggtataaatgatggtttatgagttaacaggtataaatggtgggttatgaactaaaaggtataaatgatgggttaggaATGAACAGATAttatgatgggttatgaattaaaatattttaatgatgggttatgaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU676360 lncRNA upstream 3140 29169235 ~ 29173452 (+) False G593334
TU676361 lncRNA upstream 3140 29170855 ~ 29173452 (+) True G593334
TU676362 lncRNA upstream 4885 29170354 ~ 29171707 (+) True G593335
TU676353 lncRNA upstream 14895 29161195 ~ 29161697 (+) True G593330
TU676352 lncRNA upstream 22188 29154086 ~ 29154404 (+) True G593329
TU676369 lncRNA downstream 9532 29191728 ~ 29192387 (+) True G593340
TU676370 lncRNA downstream 10295 29192491 ~ 29193079 (+) True G593341
TU676371 lncRNA downstream 10948 29193144 ~ 29193747 (+) True G593342
TU676372 lncRNA downstream 11716 29193912 ~ 29194307 (+) True G593343
TU676373 lncRNA downstream 13417 29195613 ~ 29279455 (+) True G593344
XM_021609022.2 mRNA upstream 77181 29087111 ~ 29099411 (+) True LOC110527621
XM_021609021.2 mRNA upstream 141986 29026331 ~ 29034606 (+) False LOC110527620
XM_036984418.1 mRNA upstream 163341 29010978 ~ 29013251 (+) True LOC110527630
XR_005052564.1 mRNA upstream 184355 28987346 ~ 28992237 (+) True LOC118965280
XM_036983136.1 mRNA upstream 198979 28975483 ~ 28977613 (+) True LOC118965279
XM_036983121.1 mRNA downstream 147388 29329584 ~ 29336284 (+) False LOC110527619
XR_005052561.1 mRNA downstream 147395 29329591 ~ 29364362 (+) False LOC110527619
XM_036983124.1 mRNA downstream 147397 29329593 ~ 29503787 (+) False LOC110527619
XM_036983125.1 mRNA downstream 177479 29359675 ~ 29364362 (+) False LOC110527619
XR_005052568.1 mRNA downstream 207421 29389617 ~ 29396184 (+) True LOC118965283
TU676297 other upstream 112000 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 284167 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 335509 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1302171 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 1469298 27703583 ~ 27707294 (+) True G592445
TU676195 other downstream 147476 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 345831 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 849763 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1720983 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1899525 31081721 ~ 31082290 (+) True G596297

Expression Profile