RNA id: TU676385


Basic Information

Item Value
RNA id TU676385
length 292
lncRNA type read_through
GC content 0.51
exon number 2
gene id G593354
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29237042 ~ 29255486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgctatggttagcagaaaatgttttcgatccatcgaccactgggtaatggacctagcacgcttctgctgggccacaatgtttccaaccaccccagatgggacttgaacccacaattcctggcttaggaggccagtgccttatccattaggccactggggcaatgtctacctttcacaaccagtacgaactggttatgggcccagcatgcatccgctgcacaactctgctttcagccacttcagcaaagactaaacctcacaatccatggcttaggaggccagtgtctaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676372 lncRNA upstream 42735 29193912 ~ 29194307 (+) True G593343
TU676371 lncRNA upstream 43295 29193144 ~ 29193747 (+) True G593342
TU676370 lncRNA upstream 43963 29192491 ~ 29193079 (+) True G593341
TU676369 lncRNA upstream 44655 29191728 ~ 29192387 (+) True G593340
TU676366 lncRNA upstream 54846 29176592 ~ 29182196 (+) True G593337
TU676390 lncRNA downstream 29951 29285437 ~ 29285642 (+) True G593358
TU676401 lncRNA downstream 40631 29296117 ~ 29296354 (+) True G593365
TU676402 lncRNA downstream 41642 29297128 ~ 29297427 (+) True G593366
TU676403 lncRNA downstream 42490 29297976 ~ 29298672 (+) True G593367
TU676407 lncRNA downstream 46309 29301795 ~ 29308953 (+) True G593370
XM_021609022.2 mRNA upstream 137631 29087111 ~ 29099411 (+) True LOC110527621
XM_021609021.2 mRNA upstream 202436 29026331 ~ 29034606 (+) False LOC110527620
XM_036984418.1 mRNA upstream 223791 29010978 ~ 29013251 (+) True LOC110527630
XR_005052564.1 mRNA upstream 244805 28987346 ~ 28992237 (+) True LOC118965280
XM_036983136.1 mRNA upstream 259429 28975483 ~ 28977613 (+) True LOC118965279
XM_036983121.1 mRNA downstream 74098 29329584 ~ 29336284 (+) False LOC110527619
XR_005052561.1 mRNA downstream 74105 29329591 ~ 29364362 (+) False LOC110527619
XM_036983124.1 mRNA downstream 74107 29329593 ~ 29503787 (+) False LOC110527619
XM_036983125.1 mRNA downstream 104189 29359675 ~ 29364362 (+) False LOC110527619
XR_005052568.1 mRNA downstream 134131 29389617 ~ 29396184 (+) True LOC118965283
TU676297 other upstream 172450 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 344617 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 395959 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1362621 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 1529748 27703583 ~ 27707294 (+) True G592445
TU676195 other downstream 74186 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 272541 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 776473 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1647693 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1826235 31081721 ~ 31082290 (+) True G596297

Expression Profile