RNA id: TU676402


Basic Information

Item Value
RNA id TU676402
length 300
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G593366
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29297128 ~ 29297427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATAAATTCCCCGCAAATGAAGGATCCAGATTCGTCCACTTGTTCTGTAGACATGCATTCAGCACTCCACGGGTCAGAACCTGGAATCCGCTGGTACCTCGCGATCGATTTCTCCAGAGTCCTGGAAATAAGGCCTCGTACACAGGGAATTAGACAACAGCCCCATAAAACTAAAACAGTCACACAGGTGAATGTAGCCCAtgatcaaaatatttttcaattTTCCAAACATACTATCAAACCAATTAGTCAGAGAAGTATCCACCCCAGAGTTTTCTGCCAAACCGTGAGCCAGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676401 lncRNA upstream 774 29296117 ~ 29296354 (+) True G593365
TU676390 lncRNA upstream 11486 29285437 ~ 29285642 (+) True G593358
TU676373 lncRNA upstream 17673 29195613 ~ 29279455 (+) True G593344
TU676385 lncRNA upstream 41642 29237042 ~ 29255486 (+) True G593354
TU676372 lncRNA upstream 102821 29193912 ~ 29194307 (+) True G593343
TU676403 lncRNA downstream 549 29297976 ~ 29298672 (+) True G593367
TU676407 lncRNA downstream 4368 29301795 ~ 29308953 (+) True G593370
TU676482 lncRNA downstream 119430 29416857 ~ 29418493 (+) True G593441
TU676485 lncRNA downstream 123478 29420905 ~ 29463664 (+) True G593444
TU676542 lncRNA downstream 190368 29487795 ~ 29539669 (+) True G593493
XM_021609022.2 mRNA upstream 197717 29087111 ~ 29099411 (+) True LOC110527621
XM_021609021.2 mRNA upstream 262522 29026331 ~ 29034606 (+) False LOC110527620
XM_036984418.1 mRNA upstream 283877 29010978 ~ 29013251 (+) True LOC110527630
XR_005052564.1 mRNA upstream 304891 28987346 ~ 28992237 (+) True LOC118965280
XM_036983136.1 mRNA upstream 319515 28975483 ~ 28977613 (+) True LOC118965279
XM_036983121.1 mRNA downstream 32157 29329584 ~ 29336284 (+) False LOC110527619
XR_005052561.1 mRNA downstream 32164 29329591 ~ 29364362 (+) False LOC110527619
XM_036983124.1 mRNA downstream 32166 29329593 ~ 29503787 (+) False LOC110527619
XM_036983125.1 mRNA downstream 62248 29359675 ~ 29364362 (+) False LOC110527619
XR_005052568.1 mRNA downstream 92190 29389617 ~ 29396184 (+) True LOC118965283
TU676297 other upstream 232536 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 404703 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 456045 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1422707 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 1589834 27703583 ~ 27707294 (+) True G592445
TU676195 other downstream 32245 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 230600 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 734532 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1605752 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1784294 31081721 ~ 31082290 (+) True G596297

Expression Profile