RNA id: TU678077



Basic Information


Item Value
RNA id TU678077
length 406
RNA type TUCP
GC content 0.37
exon number 4
gene id G594905
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29589993 ~ 29625899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catggaactagactatagtaacagcattgaactagattatagtaacagcatggaactagtctaaagtaacagcatggaactagactatagtaacagcatggaactagaccatagtaacagcatggaactagactatagtaacagcatgaaactaggctatagtaacagcatggaactagactatagtaacagcatggaactagaccatagtaacagcatggaactagactatagtaacagcatggaactagaccatagtaacagcatggaactagactatagtaacagcatggaactagactatagtaacagcatagaactagactatagaaacagtaaggaacaagacaatagtaattgcatggaactagactatagaaacagcatggaactagactatagaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU678033 lncRNA downstream 82906 29506801 ~ 29507087 (-) True G594864
TU677926 lncRNA downstream 94863 29492552 ~ 29495130 (-) True G594762
TU677924 lncRNA downstream 101652 29477532 ~ 29488341 (-) False G594762
TU677973 lncRNA downstream 138594 29375839 ~ 29451399 (-) True G594809
TU677968 lncRNA downstream 225993 29363090 ~ 29364000 (-) True G594804
TU678072 lncRNA upstream 8913 29634812 ~ 29688275 (-) True G594902
TU678094 lncRNA upstream 15227 29641126 ~ 29643298 (-) True G594920
TU678095 lncRNA upstream 17997 29643896 ~ 29650361 (-) True G594921
TU678096 lncRNA upstream 20516 29646415 ~ 29649760 (-) True G594922
TU678108 lncRNA upstream 43213 29669112 ~ 29673949 (-) True G594934
XM_036983130.1 mRNA downstream 50299 29537604 ~ 29539694 (-) True LOC110527615
XM_036983128.1 mRNA downstream 50301 29525727 ~ 29539692 (-) False LOC110527615
XR_005052562.1 mRNA downstream 94713 29477162 ~ 29495280 (-) False LOC110527636
XM_036983131.1 mRNA upstream 102877 29728776 ~ 29733555 (-) True LOC118965276
XM_021609043.2 mRNA upstream 207823 29833722 ~ 29838609 (-) True LOC110527637
trnaw-cca-2 mRNA upstream 264750 29890649 ~ 29890720 (-) True trnaw-cca-2
LOC118965350 mRNA upstream 400804 30026703 ~ 30028202 (-) True LOC118965350
XM_036983138.1 mRNA upstream 488735 30114634 ~ 30119849 (-) True LOC110527614
TU677925 other downstream 94863 29416855 ~ 29495130 (-) False G594762
TU677787 other downstream 563944 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 2106213 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 2423525 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 3004486 26578169 ~ 26585507 (-) True LOC110527590
TU678145 other upstream 95777 29721676 ~ 29727250 (-) False G594968
TU678146 other upstream 95777 29721676 ~ 29727490 (-) True G594968
TU678203 other upstream 202054 29827953 ~ 29829565 (-) True G595022
TU678577 other upstream 684272 30310171 ~ 30310934 (-) True G595364
TU679152 other upstream 978276 30604175 ~ 30611268 (-) True LOC110527646

Expression Profile