RNA id: TU678079


Basic Information

Item Value
RNA id TU678079
length 460
RNA type TUCP
GC content 0.38
exon number 3
gene id G594906
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29599631 ~ 29612736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatagaactagactatagaaacagcatggaactaggctatagtaacagcatggaactaggctatagtaacagcatggaactaggctatagtaacagcatggaactagactatagtaacagcatggaactaggctatagtaacagcatggaactaggctatagtaaaagcatggaactaggctatagtaacagcatggaactaggctatagtaacagcatggaactaggctatagtaacagcatggaactaggctatagtaacagcatggaactagactatagtaacagcatggaactagactatagtaactatagtaacatggaactggactatagtaacagcatggaactagacaatagtaacagcatggaactagactatagtaacagcatggaactagactatagtaacagcatggaactagactatagtaacagcatagaactagactatagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678033 lncRNA downstream 92544 29506801 ~ 29507087 (-) True G594864
TU677926 lncRNA downstream 104501 29492552 ~ 29495130 (-) True G594762
TU677924 lncRNA downstream 111290 29477532 ~ 29488341 (-) False G594762
TU677973 lncRNA downstream 148232 29375839 ~ 29451399 (-) True G594809
TU677968 lncRNA downstream 235631 29363090 ~ 29364000 (-) True G594804
TU678087 lncRNA upstream 11689 29624425 ~ 29628074 (-) True G594913
TU678072 lncRNA upstream 22076 29634812 ~ 29688275 (-) True G594902
TU678094 lncRNA upstream 28390 29641126 ~ 29643298 (-) True G594920
TU678095 lncRNA upstream 31160 29643896 ~ 29650361 (-) True G594921
TU678096 lncRNA upstream 33679 29646415 ~ 29649760 (-) True G594922
XM_036983130.1 mRNA downstream 59937 29537604 ~ 29539694 (-) True LOC110527615
XM_036983128.1 mRNA downstream 59939 29525727 ~ 29539692 (-) False LOC110527615
XR_005052562.1 mRNA downstream 104351 29477162 ~ 29495280 (-) False LOC110527636
XM_036983131.1 mRNA upstream 116040 29728776 ~ 29733555 (-) True LOC118965276
XM_021609043.2 mRNA upstream 220986 29833722 ~ 29838609 (-) True LOC110527637
trnaw-cca-2 mRNA upstream 277913 29890649 ~ 29890720 (-) True trnaw-cca-2
LOC118965350 mRNA upstream 413967 30026703 ~ 30028202 (-) True LOC118965350
XM_036983138.1 mRNA upstream 501898 30114634 ~ 30119849 (-) True LOC110527614
TU678078 other downstream 61 29596016 ~ 29599570 (-) True G594905
TU678069 other downstream 6169 29568201 ~ 29593462 (-) True G594900
TU677925 other downstream 104501 29416855 ~ 29495130 (-) False G594762
TU677787 other downstream 573582 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 2115851 27482957 ~ 27483780 (-) True G592298
TU678145 other upstream 108940 29721676 ~ 29727250 (-) False G594968
TU678146 other upstream 108940 29721676 ~ 29727490 (-) True G594968
TU678203 other upstream 215217 29827953 ~ 29829565 (-) True G595022
TU678577 other upstream 697435 30310171 ~ 30310934 (-) True G595364
TU679152 other upstream 991439 30604175 ~ 30611268 (-) True LOC110527646

Expression Profile