RNA id: TU678126


Basic Information

Item Value
RNA id TU678126
length 789
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G594952
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29700058 ~ 29701266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccgtgtgtgttCTCCGGTGTGATATCATGCCGCttagctgagtaaaactcttcccacattgatcacagctataaggtttctctcttgtctgtgttctctggtgtgatatcaggctgCTTAggtgagtaaaactcttcccacattcattacagctatacggtttctctcctgagtgtgttctctggtgtgatatcaggctgcttagctgagtaaaactcttcccacattgagtacagctaaaaggtttctctcctgtgtgtgttctatgGTGTATCTTCAGATGGTTAGATGTaaaaaaactcttcccacactgagtgCAGCTATACGatttatctcctgtgtgtgttctttggtGTACAATAAGATGGCTAGATGTatcaaaactcttcccacattcatCACAGCTATACGGTTTCTCtcgtttctctccagtgtgtgttctctggtgtgatatcagagTGCTCAGccgagtaaaactcttcccacatatACCACAGCTACAGATATAATATTtctttcctgtgtgtgttctctggtgtgatatcaggctggttgaatgagtaaaactcttcccacattgagtacagctataaggATTCTCCACTGTGTGGATTCTCTGATGGATTTTAATGCCTGCTGAGGAGGTGAGTCTCTTCCGACCGTCAGAGCAGCAATGAGATTTCTTCCCTGTGGATCTCTGCAggtgtttcttgaggtgttctgatGTGGAGATACTCTTCTCTGCCTtgtcagcatcatgaggttgttgaggctccccagaggaccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678072 lncRNA downstream 11783 29634812 ~ 29688275 (-) True G594902
TU678108 lncRNA downstream 26109 29669112 ~ 29673949 (-) True G594934
TU678095 lncRNA downstream 49697 29643896 ~ 29650361 (-) True G594921
TU678096 lncRNA downstream 50298 29646415 ~ 29649760 (-) True G594922
TU678094 lncRNA downstream 56760 29641126 ~ 29643298 (-) True G594920
TU678155 lncRNA upstream 42143 29743409 ~ 29844166 (-) True G594977
TU678178 lncRNA upstream 93472 29794738 ~ 29804394 (-) True G595000
TU678181 lncRNA upstream 101309 29802575 ~ 29819824 (-) True G595001
TU678269 lncRNA upstream 228274 29929540 ~ 29930735 (-) True G595083
TU678229 lncRNA upstream 230446 29931712 ~ 29932289 (-) True G595045
XM_036983130.1 mRNA downstream 160364 29537604 ~ 29539694 (-) True LOC110527615
XM_036983128.1 mRNA downstream 160366 29525727 ~ 29539692 (-) False LOC110527615
XR_005052562.1 mRNA downstream 204778 29477162 ~ 29495280 (-) False LOC110527636
XM_036983131.1 mRNA upstream 27510 29728776 ~ 29733555 (-) True LOC118965276
XM_021609043.2 mRNA upstream 132456 29833722 ~ 29838609 (-) True LOC110527637
trnaw-cca-2 mRNA upstream 189383 29890649 ~ 29890720 (-) True trnaw-cca-2
LOC118965350 mRNA upstream 325437 30026703 ~ 30028202 (-) True LOC118965350
XM_036983138.1 mRNA upstream 413368 30114634 ~ 30119849 (-) True LOC110527614
TU678077 other downstream 74159 29589993 ~ 29625899 (-) False G594905
TU678079 other downstream 87322 29599631 ~ 29612736 (-) True G594906
TU678078 other downstream 100488 29596016 ~ 29599570 (-) True G594905
TU678069 other downstream 106596 29568201 ~ 29593462 (-) True G594900
TU677925 other downstream 204928 29416855 ~ 29495130 (-) False G594762
TU678145 other upstream 20410 29721676 ~ 29727250 (-) False G594968
TU678146 other upstream 20410 29721676 ~ 29727490 (-) True G594968
TU678203 other upstream 126687 29827953 ~ 29829565 (-) True G595022
TU678577 other upstream 608905 30310171 ~ 30310934 (-) True G595364
TU679152 other upstream 902909 30604175 ~ 30611268 (-) True LOC110527646

Expression Profile