RNA id: TU678203


Basic Information

Item Value
RNA id TU678203
length 1335
RNA type TUCP
GC content 0.39
exon number 2
gene id G595022
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29827953 ~ 29829565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattgcatgacataagtatttgatacatcagaaaagcagaacttaatatttggtacagaaacctttgtttgcaattacagagatcatacgtggTAGAAAATGCAATTgattaaaatacaaaatactggaattatccctttacacatgtactgcactggaattatccctctacacatgtactgtactggaattatccctctacaccctttacacatgtactgtactggaattatccctctacacatgtactgtactgggatTATCcctctacacatgtactgtactgggattatctctctacacatgtactgcactggaattatccctcaacaccctttacacatgtaatgtactgtaattatCCATCTAcgcatgtactgtactggaattatccctctacaccctTTGCACATGTaatgtactggaattatccctctacacatgtactgtactggaattatccctctacacactTTACAcgtgtactgtactggaattatctctctacacatgtactgtactggaattatccctctacaccctttacacatgtaatgtactggaattatccctctacaccctttacacatgtactgtactggaattatccctctacaccctttacacatgtactgtactggaattatccctctacaccctttacacatgtactgtactggaattatccctctacaccctttacatatgtactgtactggcattatccctctacacatgtactgtactgggattatccctctacacatgtactgtactgggattatctctctacacatgtactgcactgaaaTTATCCCTCAACACCCTTTACACATGCAATGTACTGTAATTATCcttctacacatgtactgtactggaattatccctctacagcctttacacatgtactgtactggaattatccctctacaccctttacacatgtactgtactggaattatccctctacacatgtactgtactgaaattatccctctacacatgtactgtactggaattatccctctacacatgtactgtactggaattatccctctacacgtgtactgtactggaattatccctctacacatgtactgtactggaattatccctctacacatgtactgtactggaattatccctctacacatgtactgcactggaattatccctctacacatgtactgcactggaattatccctctacacatttATCCCTctacaccctttacacatgtactgtactggaattatccatCTACACATgaactgtactggaattatccctccacacatgtactgtactggaattatccctctacatatgtact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678181 lncRNA downstream 8129 29802575 ~ 29819824 (-) True G595001
TU678178 lncRNA downstream 23559 29794738 ~ 29804394 (-) True G595000
TU678126 lncRNA downstream 126687 29700058 ~ 29701266 (-) True G594952
TU678108 lncRNA downstream 154004 29669112 ~ 29673949 (-) True G594934
TU678095 lncRNA downstream 177592 29643896 ~ 29650361 (-) True G594921
TU678269 lncRNA upstream 99975 29929540 ~ 29930735 (-) True G595083
TU678229 lncRNA upstream 102147 29931712 ~ 29932289 (-) True G595045
TU678214 lncRNA upstream 112278 29941843 ~ 29944311 (-) True G595033
TU678310 lncRNA upstream 151440 29981005 ~ 29981778 (-) True G595119
TU678412 lncRNA upstream 327869 30157434 ~ 30162472 (-) False G595216
XM_036983131.1 mRNA downstream 94398 29728776 ~ 29733555 (-) True LOC118965276
XM_036983130.1 mRNA downstream 288259 29537604 ~ 29539694 (-) True LOC110527615
XM_036983128.1 mRNA downstream 288261 29525727 ~ 29539692 (-) False LOC110527615
XR_005052562.1 mRNA downstream 332673 29477162 ~ 29495280 (-) False LOC110527636
XM_021609043.2 mRNA upstream 4157 29833722 ~ 29838609 (-) True LOC110527637
trnaw-cca-2 mRNA upstream 61084 29890649 ~ 29890720 (-) True trnaw-cca-2
LOC118965350 mRNA upstream 197138 30026703 ~ 30028202 (-) True LOC118965350
XM_036983138.1 mRNA upstream 285069 30114634 ~ 30119849 (-) True LOC110527614
XM_021609026.2 mRNA upstream 292410 30121975 ~ 30126819 (-) True LOC110527624
TU678146 other downstream 100463 29721676 ~ 29727490 (-) True G594968
TU678145 other downstream 100703 29721676 ~ 29727250 (-) False G594968
TU678077 other downstream 202054 29589993 ~ 29625899 (-) False G594905
TU678079 other downstream 215217 29599631 ~ 29612736 (-) True G594906
TU678078 other downstream 228383 29596016 ~ 29599570 (-) True G594905
TU678577 other upstream 480606 30310171 ~ 30310934 (-) True G595364
TU679152 other upstream 774610 30604175 ~ 30611268 (-) True LOC110527646
TU679349 other upstream 1014616 30844181 ~ 30844624 (-) True G596094
TU679294 other upstream 1033292 30862857 ~ 30863320 (-) True G596039
TU679613 other upstream 1106600 30936165 ~ 30936614 (-) True G596352

Expression Profile