RNA id: TU679056



Basic Information


Item Value
RNA id TU679056
length 331
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G595820
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30462669 ~ 30492735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacaaacatagactgcccacccaactcacgccctgaccatactaaataaatacaaaaacaaaggaaatagaggtcagaacgtgacagtcatagttgaagtgtacctataatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatgtaaataatgtatttctgttttatttgtaataaatttgcaaacatttctaaaatctgtttttgccttctcattatgggggattgtgtgtagatagatgaggaacatgttttatttaatacattttagaataaagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679032 lncRNA downstream 21214 30441077 ~ 30441455 (-) True G595798
TU679030 lncRNA downstream 22971 30439468 ~ 30439698 (-) True G595796
TU679026 lncRNA downstream 27392 30435061 ~ 30435277 (-) True G595792
TU679012 lncRNA downstream 42038 30420349 ~ 30420631 (-) True G595778
TU678707 lncRNA downstream 104148 30358291 ~ 30358521 (-) True G595486
TU679077 lncRNA upstream 2261 30494996 ~ 30495223 (-) True G595841
TU679121 lncRNA upstream 46131 30538866 ~ 30539591 (-) True G595876
TU679125 lncRNA upstream 50062 30542797 ~ 30543015 (-) True G595879
TU679095 lncRNA upstream 83382 30576117 ~ 30578870 (-) True G595853
TU679133 lncRNA upstream 86973 30579708 ~ 30579919 (-) True G595887
XM_021609047.2 mRNA downstream 67878 30313379 ~ 30394791 (-) False LOC110527641
XM_021609046.2 mRNA downstream 67879 30313379 ~ 30394790 (-) False LOC110527641
XM_021609049.2 mRNA downstream 135257 30313379 ~ 30327412 (-) False LOC110527641
XM_021609026.2 mRNA downstream 335850 30121975 ~ 30126819 (-) True LOC110527624
XM_036983138.1 mRNA downstream 342820 30114634 ~ 30119849 (-) True LOC110527614
XM_021609054.2 mRNA upstream 92768 30585503 ~ 30593851 (-) True LOC110527645
XM_021609055.2 mRNA upstream 111362 30604097 ~ 30611219 (-) False LOC110527646
XM_036984423.1 mRNA upstream 156254 30648989 ~ 30686105 (-) True LOC110528941
LOC118965351 mRNA upstream 405192 30897927 ~ 30912147 (-) False LOC118965351
XM_021609062.2 mRNA upstream 456742 30949477 ~ 30953659 (-) True LOC110527649
TU678577 other downstream 151735 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 633104 29827953 ~ 29829565 (-) True G595022
TU678146 other downstream 735179 29721676 ~ 29727490 (-) True G594968
TU678145 other downstream 735419 29721676 ~ 29727250 (-) False G594968
TU678079 other downstream 849933 29599631 ~ 29612736 (-) True G594906
TU679152 other upstream 111440 30604175 ~ 30611268 (-) True LOC110527646
TU679349 other upstream 351446 30844181 ~ 30844624 (-) True G596094
TU679294 other upstream 370122 30862857 ~ 30863320 (-) True G596039
TU679613 other upstream 443430 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 585777 31078512 ~ 31079318 (-) True G596433

Expression Profile