RNA id: TU679361



Basic Information


Item Value
RNA id TU679361
length 209
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G596105
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30863650 ~ 30863858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggcattgtgttgtgtgaaaactgcacattttagagtggtcttgtattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatatgtcacacccgAAACGTGGATTATttttgcaaaggagaaatgctcactaacagggatgtaacatTTGTACACAAAacttgagagaaatacgctttttgtgct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679167 lncRNA downstream 227631 30634500 ~ 30636019 (-) True G595917
TU679168 lncRNA downstream 229759 30633374 ~ 30633891 (-) True G595918
TU679164 lncRNA downstream 236936 30623484 ~ 30626714 (-) True G595915
TU679145 lncRNA downstream 267492 30595053 ~ 30596158 (-) True G595899
TU679134 lncRNA downstream 282619 30580817 ~ 30581031 (-) True G595888
TU679371 lncRNA upstream 3536 30867394 ~ 30867610 (-) True G596115
TU679403 lncRNA upstream 22111 30885969 ~ 30886210 (-) True G596145
TU679404 lncRNA upstream 23238 30887096 ~ 30887375 (-) True G596146
TU679411 lncRNA upstream 30211 30894069 ~ 30894305 (-) True G596153
TU679413 lncRNA upstream 30589 30894447 ~ 30894708 (-) True G596155
XM_036984423.1 mRNA downstream 177545 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 252431 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 269799 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 468859 30313379 ~ 30394791 (-) False LOC110527641
XM_021609046.2 mRNA downstream 468860 30313379 ~ 30394790 (-) False LOC110527641
LOC118965351 mRNA upstream 34069 30897927 ~ 30912147 (-) False LOC118965351
XM_021609062.2 mRNA upstream 85619 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 126001 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 127980 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 163460 31027318 ~ 31037871 (-) True LOC110527651
TU679294 other downstream 330 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 19026 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 252382 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 552716 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 1034085 29827953 ~ 29829565 (-) True G595022
TU679613 other upstream 72307 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 214654 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1554332 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2374189 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2374289 33238147 ~ 33239795 (-) True G599058

Expression Profile