RNA id: TU679596



Basic Information


Item Value
RNA id TU679596
length 282
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G596335
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30923457 ~ 30923738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acatggaactttagataaacttctccttaatgcaaccactgtgtcagatttcaaaaagctttaccaaaaaagcaaaccatgcaataatctgagtacagcgctcagagaccaaaacaagccaaacagatatccgccatgttgtgtagtcaacagaagtcagaaatagcattatacattttcacttacctttgatgatcttcatcagaatgcactcccaggaatcccagttccacaataaatgtttgatttgttcgataaagttaataatttatgtccaaatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679434 lncRNA downstream 12274 30910951 ~ 30911183 (-) True LOC118965351
TU679432 lncRNA downstream 14557 30908650 ~ 30908900 (-) True G596174
TU679427 lncRNA downstream 18703 30904477 ~ 30904754 (-) True G596169
TU679413 lncRNA downstream 28749 30894447 ~ 30894708 (-) True G596155
TU679411 lncRNA downstream 29152 30894069 ~ 30894305 (-) True G596153
TU679610 lncRNA upstream 9866 30933604 ~ 30933848 (-) True G596349
TU679615 lncRNA upstream 15206 30938944 ~ 30939145 (-) True G596354
TU679617 lncRNA upstream 17341 30941079 ~ 30941381 (-) True G596356
TU679683 lncRNA upstream 153160 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 175273 31099011 ~ 31107231 (-) True G596441
LOC118965351 mRNA downstream 11310 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 237352 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 312238 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 329606 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 528666 30313379 ~ 30394791 (-) False LOC110527641
XM_021609062.2 mRNA upstream 25739 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 66121 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 68100 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 103580 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 153149 31076887 ~ 31097917 (-) False LOC110527652
TU679294 other downstream 60137 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 78833 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 312189 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 612523 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 1093892 29827953 ~ 29829565 (-) True G595022
TU679613 other upstream 12427 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 154774 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1494452 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2314309 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2314409 33238147 ~ 33239795 (-) True G599058

Expression Profile