RNA id: TU679613



Basic Information


Item Value
RNA id TU679613
length 450
RNA type TUCP
GC content 0.53
exon number 1
gene id G596352
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30936165 ~ 30936614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggggcccctcaggggtgcgtgctcagtcccctcctgtactccccgttcactcatgacggccaggcacgactccaacaccatcatcaagtttgccgatgacacaacagtggtaggcctgatcaccaacaacgatgagacagcctattgggaggaggtcagagacctggccatgtggtgccaggacaacaacctctccctcaacgtgatcaagagaaaagagatgattgtggactacatgaaaaggaggaccaagcaagCCAccgttctcatcgacggggctgcagtgcagtaggttgagagcttcaagttccttggtgtccacatcaccaacaaactatcatggtccaaacacactaagacagtcgtgaagagggcacgacaaagcctattccccctcaggagactgaaaagatttggcatggttcctcagatcctctaaaggttccacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679610 lncRNA downstream 2317 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 12427 30923457 ~ 30923738 (-) True G596335
TU679434 lncRNA downstream 24982 30910951 ~ 30911183 (-) True LOC118965351
TU679432 lncRNA downstream 27265 30908650 ~ 30908900 (-) True G596174
TU679427 lncRNA downstream 31411 30904477 ~ 30904754 (-) True G596169
TU679615 lncRNA upstream 2330 30938944 ~ 30939145 (-) True G596354
TU679617 lncRNA upstream 4465 30941079 ~ 30941381 (-) True G596356
TU679683 lncRNA upstream 140284 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 162397 31099011 ~ 31107231 (-) True G596441
TU679736 lncRNA upstream 202859 31139473 ~ 31139786 (-) True G596471
LOC118965351 mRNA downstream 24018 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 250060 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 324946 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 342314 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 541374 30313379 ~ 30394791 (-) False LOC110527641
XM_021609062.2 mRNA upstream 12863 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 53245 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 55224 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 90704 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 140273 31076887 ~ 31097917 (-) False LOC110527652
TU679294 other downstream 72845 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 91541 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 324897 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 625231 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 1106600 29827953 ~ 29829565 (-) True G595022
TU679696 other upstream 141898 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1481576 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2301433 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2301533 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2739465 33676079 ~ 33677297 (-) False G599788

Expression Profile